Summary Structural details Experimental details Functional details Sequence Neighbor History Downloads

5JJK

Rho transcription termination factor bound to rA7 and 6 ADP-BeF3 molecules

Functional Information from GO Data

Chain	GOid	namespace	contents
A	0003676	molecular_function	nucleic acid binding
A	0003723	molecular_function	RNA binding
A	0004386	molecular_function	helicase activity
A	0005515	molecular_function	protein binding
A	0005524	molecular_function	ATP binding
A	0005829	cellular_component	cytosol
A	0006353	biological_process	DNA-templated transcription termination
A	0008186	molecular_function	ATP-dependent activity, acting on RNA
A	0016020	cellular_component	membrane
A	0016787	molecular_function	hydrolase activity
A	0016887	molecular_function	ATP hydrolysis activity
A	0042802	molecular_function	identical protein binding
B	0003676	molecular_function	nucleic acid binding
B	0003723	molecular_function	RNA binding
B	0004386	molecular_function	helicase activity
B	0005515	molecular_function	protein binding
B	0005524	molecular_function	ATP binding
B	0005829	cellular_component	cytosol
B	0006353	biological_process	DNA-templated transcription termination
B	0008186	molecular_function	ATP-dependent activity, acting on RNA
B	0016020	cellular_component	membrane
B	0016787	molecular_function	hydrolase activity
B	0016887	molecular_function	ATP hydrolysis activity
B	0042802	molecular_function	identical protein binding
C	0003676	molecular_function	nucleic acid binding
C	0003723	molecular_function	RNA binding
C	0004386	molecular_function	helicase activity
C	0005515	molecular_function	protein binding
C	0005524	molecular_function	ATP binding
C	0005829	cellular_component	cytosol
C	0006353	biological_process	DNA-templated transcription termination
C	0008186	molecular_function	ATP-dependent activity, acting on RNA
C	0016020	cellular_component	membrane
C	0016787	molecular_function	hydrolase activity
C	0016887	molecular_function	ATP hydrolysis activity
C	0042802	molecular_function	identical protein binding
D	0003676	molecular_function	nucleic acid binding
D	0003723	molecular_function	RNA binding
D	0004386	molecular_function	helicase activity
D	0005515	molecular_function	protein binding
D	0005524	molecular_function	ATP binding
D	0005829	cellular_component	cytosol
D	0006353	biological_process	DNA-templated transcription termination
D	0008186	molecular_function	ATP-dependent activity, acting on RNA
D	0016020	cellular_component	membrane
D	0016787	molecular_function	hydrolase activity
D	0016887	molecular_function	ATP hydrolysis activity
D	0042802	molecular_function	identical protein binding
E	0003676	molecular_function	nucleic acid binding
E	0003723	molecular_function	RNA binding
E	0004386	molecular_function	helicase activity
E	0005515	molecular_function	protein binding
E	0005524	molecular_function	ATP binding
E	0005829	cellular_component	cytosol
E	0006353	biological_process	DNA-templated transcription termination
E	0008186	molecular_function	ATP-dependent activity, acting on RNA
E	0016020	cellular_component	membrane
E	0016787	molecular_function	hydrolase activity
E	0016887	molecular_function	ATP hydrolysis activity
E	0042802	molecular_function	identical protein binding
F	0003676	molecular_function	nucleic acid binding
F	0003723	molecular_function	RNA binding
F	0004386	molecular_function	helicase activity
F	0005515	molecular_function	protein binding
F	0005524	molecular_function	ATP binding
F	0005829	cellular_component	cytosol
F	0006353	biological_process	DNA-templated transcription termination
F	0008186	molecular_function	ATP-dependent activity, acting on RNA
F	0016020	cellular_component	membrane
F	0016787	molecular_function	hydrolase activity
F	0016887	molecular_function	ATP hydrolysis activity
F	0042802	molecular_function	identical protein binding

Functional Information from PDB Data

site_id	AC1
Number of Residues	15
Details	binding site for residue ADP A 1000

Chain	Residue
A	THR158
A	MG1001
A	BEF1002
A	HOH1101
A	HOH1103
B	ARG366
B	LYS367
A	PRO179
A	LYS181
A	ALA182
A	GLY183
A	LYS184
A	THR185
A	MSE186
A	PHE355

site_id	AC2
Number of Residues	6
Details	binding site for residue MG A 1001

Chain	Residue
A	THR185
A	ADP1000
A	BEF1002
A	HOH1101
A	HOH1102
A	HOH1103

site_id	AC3
Number of Residues	12
Details	binding site for residue BEF A 1002

Chain	Residue
A	PRO180
A	LYS181
A	LYS184
A	ARG212
A	LEU320
A	ADP1000
A	MG1001
A	HOH1101
A	HOH1102
A	HOH1103
B	GLY337
B	ARG366

site_id	AC4
Number of Residues	15
Details	binding site for residue ADP B 1000

Chain	Residue
B	THR158
B	PRO179
B	LYS181
B	ALA182
B	GLY183
B	LYS184
B	THR185
B	MSE186
B	PHE355
B	MG1001
B	BEF1002
B	HOH1101
B	HOH1103
C	ARG366
C	LYS367

site_id	AC5
Number of Residues	6
Details	binding site for residue MG B 1001

Chain	Residue
B	THR185
B	ADP1000
B	BEF1002
B	HOH1101
B	HOH1102
B	HOH1103

site_id	AC6
Number of Residues	12
Details	binding site for residue BEF B 1002

Chain	Residue
B	PRO180
B	LYS181
B	LYS184
B	ARG212
B	LEU320
B	ADP1000
B	MG1001
B	HOH1101
B	HOH1102
B	HOH1103
C	GLY337
C	ARG366

site_id	AC7
Number of Residues	15
Details	binding site for residue ADP C 1000

Chain	Residue
C	THR158
C	PRO179
C	LYS181
C	ALA182
C	GLY183
C	LYS184
C	THR185
C	MSE186
C	PHE355
C	MG1001
C	BEF1002
C	HOH1101
C	HOH1102
D	ARG366
D	LYS367

site_id	AC8
Number of Residues	6
Details	binding site for residue MG C 1001

Chain	Residue
C	THR185
C	ADP1000
C	BEF1002
C	HOH1101
C	HOH1102
C	HOH1103

site_id	AC9
Number of Residues	12
Details	binding site for residue BEF C 1002

Chain	Residue
C	PRO180
C	LYS181
C	LYS184
C	ARG212
C	LEU320
C	ADP1000
C	MG1001
C	HOH1101
C	HOH1102
C	HOH1103
D	GLY337
D	ARG366

site_id	AD1
Number of Residues	14
Details	binding site for residue ADP D 1000

Chain	Residue
D	PRO179
D	LYS181
D	ALA182
D	GLY183
D	LYS184
D	THR185
D	MSE186
D	PHE355
D	MG1001
D	BEF1002
D	HOH1101
D	HOH1102
E	ARG366
E	LYS367

site_id	AD2
Number of Residues	6
Details	binding site for residue MG D 1001

Chain	Residue
D	THR185
D	ADP1000
D	BEF1002
D	HOH1101
D	HOH1102
D	HOH1103

site_id	AD3
Number of Residues	12
Details	binding site for residue BEF D 1002

Chain	Residue
D	PRO180
D	LYS181
D	LYS184
D	ARG212
D	LEU320
D	ADP1000
D	MG1001
D	HOH1101
D	HOH1102
D	HOH1103
E	GLY337
E	ARG366

site_id	AD4
Number of Residues	13
Details	binding site for residue ADP E 1000

Chain	Residue
E	PRO179
E	LYS181
E	ALA182
E	GLY183
E	LYS184
E	THR185
E	MSE186
E	PHE355
E	MG1001
E	BEF1002
E	HOH1101
E	HOH1102
F	ARG366

site_id	AD5
Number of Residues	6
Details	binding site for residue MG E 1001

Chain	Residue
E	THR185
E	ADP1000
E	BEF1002
E	HOH1101
E	HOH1102
E	HOH1103

site_id	AD6
Number of Residues	9
Details	binding site for residue BEF E 1002

Chain	Residue
E	LYS184
E	ARG212
E	ARG269
E	ADP1000
E	MG1001
E	HOH1101
E	HOH1102
E	HOH1103
F	ARG366

site_id	AD7
Number of Residues	15
Details	binding site for residue ADP F 1000

Chain	Residue
A	ARG366
A	LYS367
A	GLU369
F	PRO179
F	LYS181
F	ALA182
F	GLY183
F	LYS184
F	THR185
F	MSE186
F	PHE355
F	MG1001
F	BEF1002
F	HOH1101
F	HOH1102

site_id	AD8
Number of Residues	6
Details	binding site for residue MG F 1001

Chain	Residue
F	THR185
F	ADP1000
F	BEF1002
F	HOH1101
F	HOH1102
F	HOH1103

site_id	AD9
Number of Residues	10
Details	binding site for residue BEF F 1002

Chain	Residue
A	ARG366
F	PRO180
F	LYS184
F	ARG212
F	LEU320
F	ADP1000
F	MG1001
F	HOH1101
F	HOH1102
F	HOH1103

Functional Information from SwissProt/UniProt

site_id	SWS_FT_FI1
Number of Residues	6
Details	BINDING: BINDING => ECO:0000255

Chain	Residue	Details
A	GLY169
B	GLY169
C	GLY169
D	GLY169
E	GLY169
F	GLY169

site_id	SWS_FT_FI2
Number of Residues	12
Details	BINDING:

Chain	Residue	Details
D	LYS181
D	ARG212
E	LYS181
E	ARG212
F	LYS181
F	ARG212
A	LYS181
A	ARG212
B	LYS181
B	ARG212
C	LYS181
C	ARG212

site_id	SWS_FT_FI3
Number of Residues	6
Details	SITE: RNA-binding 2

Chain	Residue	Details
A	LYS326
B	LYS326
C	LYS326
D	LYS326
E	LYS326
F	LYS326

		Sequence (fasta)
		PDBx/mmCIF
		PDBML format (no-atom)
		PDB format (full)
		Validation report (PDF)
		EDMap 2fo-fc (MTZ)