5IU0
Rubisco from Arabidopsis thaliana
Functional Information from GO Data
| Chain | GOid | namespace | contents |
| A | 0000287 | molecular_function | magnesium ion binding |
| A | 0003729 | molecular_function | mRNA binding |
| A | 0004497 | molecular_function | monooxygenase activity |
| A | 0005515 | molecular_function | protein binding |
| A | 0009505 | cellular_component | plant-type cell wall |
| A | 0009507 | cellular_component | chloroplast |
| A | 0009535 | cellular_component | chloroplast thylakoid membrane |
| A | 0009536 | cellular_component | plastid |
| A | 0009570 | cellular_component | chloroplast stroma |
| A | 0009579 | cellular_component | thylakoid |
| A | 0009737 | biological_process | response to abscisic acid |
| A | 0009853 | biological_process | photorespiration |
| A | 0009941 | cellular_component | chloroplast envelope |
| A | 0015977 | biological_process | carbon fixation |
| A | 0015979 | biological_process | photosynthesis |
| A | 0016829 | molecular_function | lyase activity |
| A | 0016984 | molecular_function | ribulose-bisphosphate carboxylase activity |
| A | 0019253 | biological_process | reductive pentose-phosphate cycle |
| A | 0022626 | cellular_component | cytosolic ribosome |
| A | 0046686 | biological_process | response to cadmium ion |
| A | 0046872 | molecular_function | metal ion binding |
| A | 0048046 | cellular_component | apoplast |
| B | 0000287 | molecular_function | magnesium ion binding |
| B | 0003729 | molecular_function | mRNA binding |
| B | 0004497 | molecular_function | monooxygenase activity |
| B | 0005515 | molecular_function | protein binding |
| B | 0009505 | cellular_component | plant-type cell wall |
| B | 0009507 | cellular_component | chloroplast |
| B | 0009535 | cellular_component | chloroplast thylakoid membrane |
| B | 0009536 | cellular_component | plastid |
| B | 0009570 | cellular_component | chloroplast stroma |
| B | 0009579 | cellular_component | thylakoid |
| B | 0009737 | biological_process | response to abscisic acid |
| B | 0009853 | biological_process | photorespiration |
| B | 0009941 | cellular_component | chloroplast envelope |
| B | 0015977 | biological_process | carbon fixation |
| B | 0015979 | biological_process | photosynthesis |
| B | 0016829 | molecular_function | lyase activity |
| B | 0016984 | molecular_function | ribulose-bisphosphate carboxylase activity |
| B | 0019253 | biological_process | reductive pentose-phosphate cycle |
| B | 0022626 | cellular_component | cytosolic ribosome |
| B | 0046686 | biological_process | response to cadmium ion |
| B | 0046872 | molecular_function | metal ion binding |
| B | 0048046 | cellular_component | apoplast |
| I | 0003729 | molecular_function | mRNA binding |
| I | 0009507 | cellular_component | chloroplast |
| I | 0009536 | cellular_component | plastid |
| I | 0009570 | cellular_component | chloroplast stroma |
| I | 0009579 | cellular_component | thylakoid |
| I | 0009853 | biological_process | photorespiration |
| I | 0009941 | cellular_component | chloroplast envelope |
| I | 0015977 | biological_process | carbon fixation |
| I | 0015979 | biological_process | photosynthesis |
| I | 0016984 | molecular_function | ribulose-bisphosphate carboxylase activity |
| I | 0019253 | biological_process | reductive pentose-phosphate cycle |
| I | 0019904 | molecular_function | protein domain specific binding |
| I | 0048046 | cellular_component | apoplast |
| J | 0003729 | molecular_function | mRNA binding |
| J | 0009507 | cellular_component | chloroplast |
| J | 0009536 | cellular_component | plastid |
| J | 0009570 | cellular_component | chloroplast stroma |
| J | 0009579 | cellular_component | thylakoid |
| J | 0009853 | biological_process | photorespiration |
| J | 0009941 | cellular_component | chloroplast envelope |
| J | 0015977 | biological_process | carbon fixation |
| J | 0015979 | biological_process | photosynthesis |
| J | 0016984 | molecular_function | ribulose-bisphosphate carboxylase activity |
| J | 0019253 | biological_process | reductive pentose-phosphate cycle |
| J | 0019904 | molecular_function | protein domain specific binding |
| J | 0048046 | cellular_component | apoplast |
Functional Information from PDB Data
| site_id | AC1 |
| Number of Residues | 4 |
| Details | binding site for residue MG A 501 |
| Chain | Residue |
| A | KCX201 |
| A | ASP203 |
| A | GLU204 |
| A | CAP502 |
| site_id | AC2 |
| Number of Residues | 26 |
| Details | binding site for residue CAP A 502 |
| Chain | Residue |
| A | GLU204 |
| A | HIS294 |
| A | ARG295 |
| A | HIS327 |
| A | LYS334 |
| A | SER379 |
| A | GLY380 |
| A | GLY381 |
| A | GLY403 |
| A | GLY404 |
| A | MG501 |
| A | HOH661 |
| A | HOH677 |
| A | HOH690 |
| A | HOH698 |
| A | HOH708 |
| A | HOH712 |
| B | GLU60 |
| B | THR65 |
| B | TRP66 |
| B | ASN123 |
| A | THR173 |
| A | LYS175 |
| A | LYS177 |
| A | KCX201 |
| A | ASP203 |
| site_id | AC3 |
| Number of Residues | 9 |
| Details | binding site for residue EDO A 503 |
| Chain | Residue |
| A | GLY111 |
| A | PHE148 |
| A | GLN149 |
| A | THR278 |
| A | HIS282 |
| A | HOH610 |
| A | HOH694 |
| A | HOH777 |
| B | THR246 |
| site_id | AC4 |
| Number of Residues | 7 |
| Details | binding site for residue EDO A 504 |
| Chain | Residue |
| A | THR145 |
| A | LYS146 |
| A | PHE148 |
| A | LEU371 |
| A | HOH770 |
| A | HOH811 |
| B | GLU110 |
| site_id | AC5 |
| Number of Residues | 7 |
| Details | binding site for residue EDO A 505 |
| Chain | Residue |
| A | GLU110 |
| A | HOH783 |
| A | HOH839 |
| B | THR145 |
| B | LYS146 |
| B | PHE148 |
| B | LEU371 |
| site_id | AC6 |
| Number of Residues | 8 |
| Details | binding site for residue EDO A 506 |
| Chain | Residue |
| A | LYS18 |
| A | THR65 |
| A | TRP66 |
| A | THR67 |
| A | THR68 |
| A | EDO509 |
| A | HOH773 |
| A | HOH817 |
| site_id | AC7 |
| Number of Residues | 4 |
| Details | binding site for residue EDO A 507 |
| Chain | Residue |
| A | LEU270 |
| A | HOH748 |
| A | HOH749 |
| B | LEU270 |
| site_id | AC8 |
| Number of Residues | 8 |
| Details | binding site for residue EDO A 508 |
| Chain | Residue |
| A | GLN304 |
| A | ASN306 |
| A | HIS307 |
| A | HOH646 |
| A | HOH762 |
| B | GLN304 |
| B | ASN306 |
| B | HIS307 |
| site_id | AC9 |
| Number of Residues | 7 |
| Details | binding site for residue EDO A 509 |
| Chain | Residue |
| A | THR65 |
| A | THR67 |
| A | THR68 |
| A | VAL69 |
| A | ASP72 |
| A | EDO506 |
| A | HOH633 |
| site_id | AD1 |
| Number of Residues | 4 |
| Details | binding site for residue EDO A 510 |
| Chain | Residue |
| A | GLN149 |
| A | ASP286 |
| A | HOH617 |
| A | HOH813 |
| site_id | AD2 |
| Number of Residues | 4 |
| Details | binding site for residue MG B 501 |
| Chain | Residue |
| B | KCX201 |
| B | ASP203 |
| B | GLU204 |
| B | CAP502 |
| site_id | AD3 |
| Number of Residues | 28 |
| Details | binding site for residue CAP B 502 |
| Chain | Residue |
| B | HIS294 |
| B | ARG295 |
| B | HIS327 |
| B | LYS334 |
| B | LEU335 |
| B | SER379 |
| B | GLY380 |
| B | GLY381 |
| B | GLY403 |
| B | GLY404 |
| B | MG501 |
| B | HOH628 |
| B | HOH643 |
| B | HOH665 |
| B | HOH697 |
| B | HOH748 |
| B | HOH765 |
| A | GLU60 |
| A | THR65 |
| A | TRP66 |
| A | ASN123 |
| A | HOH812 |
| B | THR173 |
| B | LYS175 |
| B | LYS177 |
| B | KCX201 |
| B | ASP203 |
| B | GLU204 |
| site_id | AD4 |
| Number of Residues | 8 |
| Details | binding site for residue EDO B 503 |
| Chain | Residue |
| B | LYS18 |
| B | THR65 |
| B | TRP66 |
| B | THR67 |
| B | THR68 |
| B | EDO504 |
| B | HOH708 |
| B | HOH721 |
| site_id | AD5 |
| Number of Residues | 9 |
| Details | binding site for residue EDO B 504 |
| Chain | Residue |
| B | TYR24 |
| B | THR68 |
| B | VAL69 |
| B | ASP72 |
| B | LEU77 |
| B | EDO503 |
| B | HOH708 |
| B | HOH719 |
| B | HOH749 |
| site_id | AD6 |
| Number of Residues | 7 |
| Details | binding site for residue EDO B 505 |
| Chain | Residue |
| B | ASN163 |
| B | TYR165 |
| B | HOH753 |
| J | GLU13 |
| J | ARG100 |
| J | SER114 |
| J | HOH235 |
| site_id | AD7 |
| Number of Residues | 6 |
| Details | binding site for residue EDO I 201 |
| Chain | Residue |
| A | ASN163 |
| A | TYR165 |
| I | GLU13 |
| I | ARG100 |
| I | SER114 |
| I | HOH345 |
| site_id | AD8 |
| Number of Residues | 7 |
| Details | binding site for residue EDO I 202 |
| Chain | Residue |
| A | ASP160 |
| A | ASN163 |
| A | LYS183 |
| A | PHE220 |
| A | GLU223 |
| I | ARG65 |
| I | TYR66 |
Functional Information from PROSITE/UniProt
| site_id | PS00157 |
| Number of Residues | 9 |
| Details | RUBISCO_LARGE Ribulose bisphosphate carboxylase large chain active site. GlDFtKdDE |
| Chain | Residue | Details |
| A | GLY196-GLU204 |
Functional Information from SwissProt/UniProt
| site_id | SWS_FT_FI1 |
| Number of Residues | 4 |
| Details | ACT_SITE: Proton acceptor => ECO:0000255|HAMAP-Rule:MF_01338 |
| Chain | Residue | Details |
| A | LYS175 | |
| A | HIS294 | |
| B | LYS175 | |
| B | HIS294 |
| site_id | SWS_FT_FI2 |
| Number of Residues | 10 |
| Details | BINDING: BINDING => ECO:0000269|PubMed:29372894, ECO:0007744|PDB:5IU0 |
| Chain | Residue | Details |
| A | THR65 | |
| B | SER379 | |
| A | THR173 | |
| A | HIS294 | |
| A | LYS334 | |
| A | SER379 | |
| B | THR65 | |
| B | THR173 | |
| B | HIS294 | |
| B | LYS334 |
| site_id | SWS_FT_FI3 |
| Number of Residues | 2 |
| Details | BINDING: in homodimeric partner => ECO:0000255|HAMAP-Rule:MF_01338, ECO:0000269|PubMed:29372894, ECO:0007744|PDB:5IU0 |
| Chain | Residue | Details |
| A | ASN123 | |
| B | ASN123 |
| site_id | SWS_FT_FI4 |
| Number of Residues | 2 |
| Details | BINDING: via carbamate group => ECO:0000255|HAMAP-Rule:MF_01338, ECO:0000269|PubMed:29372894, ECO:0007744|PDB:5IU0 |
| Chain | Residue | Details |
| A | KCX201 | |
| B | KCX201 |
| site_id | SWS_FT_FI5 |
| Number of Residues | 6 |
| Details | BINDING: BINDING => ECO:0000255|HAMAP-Rule:MF_01338, ECO:0000269|PubMed:29372894, ECO:0007744|PDB:5IU0 |
| Chain | Residue | Details |
| A | ASP203 | |
| A | GLU204 | |
| A | HIS327 | |
| B | ASP203 | |
| B | GLU204 | |
| B | HIS327 |
| site_id | SWS_FT_FI6 |
| Number of Residues | 2 |
| Details | SITE: Transition state stabilizer => ECO:0000255|HAMAP-Rule:MF_01338 |
| Chain | Residue | Details |
| A | LYS334 | |
| B | LYS334 |
| site_id | SWS_FT_FI7 |
| Number of Residues | 2 |
| Details | MOD_RES: N-acetylproline => ECO:0007744|PubMed:22223895 |
| Chain | Residue | Details |
| A | PRO3 | |
| B | PRO3 |
| site_id | SWS_FT_FI8 |
| Number of Residues | 2 |
| Details | MOD_RES: N6-carboxylysine => ECO:0000255|HAMAP-Rule:MF_01338, ECO:0000269|PubMed:29372894, ECO:0007744|PDB:5IU0 |
| Chain | Residue | Details |
| A | KCX201 | |
| B | KCX201 |
| site_id | SWS_FT_FI9 |
| Number of Residues | 2 |
| Details | MOD_RES: Phosphoserine => ECO:0007744|PubMed:22092075 |
| Chain | Residue | Details |
| A | SER208 | |
| B | SER208 |
| site_id | SWS_FT_FI10 |
| Number of Residues | 2 |
| Details | MOD_RES: Phosphothreonine => ECO:0007744|PubMed:19376835 |
| Chain | Residue | Details |
| A | THR330 | |
| B | THR330 |
