5IE3
Crystal structure of a plant enzyme
Functional Information from GO Data
| Chain | GOid | namespace | contents |
| A | 0000166 | molecular_function | nucleotide binding |
| A | 0005524 | molecular_function | ATP binding |
| A | 0005737 | cellular_component | cytoplasm |
| A | 0005739 | cellular_component | mitochondrion |
| A | 0005829 | cellular_component | cytosol |
| A | 0006631 | biological_process | fatty acid metabolic process |
| A | 0006952 | biological_process | defense response |
| A | 0009506 | cellular_component | plasmodesma |
| A | 0009507 | cellular_component | chloroplast |
| A | 0009570 | cellular_component | chloroplast stroma |
| A | 0010030 | biological_process | positive regulation of seed germination |
| A | 0010214 | biological_process | seed coat development |
| A | 0016874 | molecular_function | ligase activity |
| A | 0031956 | molecular_function | medium-chain fatty acid-CoA ligase activity |
| A | 0033611 | biological_process | oxalate catabolic process |
| A | 0048046 | cellular_component | apoplast |
| A | 0050203 | molecular_function | oxalate-CoA ligase activity |
| A | 0050832 | biological_process | defense response to fungus |
| B | 0000166 | molecular_function | nucleotide binding |
| B | 0005524 | molecular_function | ATP binding |
| B | 0005737 | cellular_component | cytoplasm |
| B | 0005739 | cellular_component | mitochondrion |
| B | 0005829 | cellular_component | cytosol |
| B | 0006631 | biological_process | fatty acid metabolic process |
| B | 0006952 | biological_process | defense response |
| B | 0009506 | cellular_component | plasmodesma |
| B | 0009507 | cellular_component | chloroplast |
| B | 0009570 | cellular_component | chloroplast stroma |
| B | 0010030 | biological_process | positive regulation of seed germination |
| B | 0010214 | biological_process | seed coat development |
| B | 0016874 | molecular_function | ligase activity |
| B | 0031956 | molecular_function | medium-chain fatty acid-CoA ligase activity |
| B | 0033611 | biological_process | oxalate catabolic process |
| B | 0048046 | cellular_component | apoplast |
| B | 0050203 | molecular_function | oxalate-CoA ligase activity |
| B | 0050832 | biological_process | defense response to fungus |
Functional Information from PDB Data
| site_id | AC1 |
| Number of Residues | 21 |
| Details | binding site for residue AMP A 601 |
| Chain | Residue |
| A | SER171 |
| A | VAL337 |
| A | ASP394 |
| A | LEU406 |
| A | ARG409 |
| A | LYS500 |
| A | OXD602 |
| A | HOH707 |
| A | HOH713 |
| A | HOH718 |
| A | HOH860 |
| A | SER289 |
| A | HOH895 |
| A | HOH930 |
| A | ALA290 |
| A | SER291 |
| A | GLU310 |
| A | ALA311 |
| A | ALA313 |
| A | MET314 |
| A | THR315 |
| site_id | AC2 |
| Number of Residues | 9 |
| Details | binding site for residue OXD A 602 |
| Chain | Residue |
| A | VAL215 |
| A | HIS216 |
| A | SER289 |
| A | ALA313 |
| A | MET314 |
| A | THR315 |
| A | HIS319 |
| A | LYS500 |
| A | AMP601 |
| site_id | AC3 |
| Number of Residues | 22 |
| Details | binding site for residue AMP B 601 |
| Chain | Residue |
| B | SER171 |
| B | SER289 |
| B | ALA290 |
| B | SER291 |
| B | GLU310 |
| B | ALA311 |
| B | ALA313 |
| B | MET314 |
| B | THR315 |
| B | VAL337 |
| B | ASP394 |
| B | LEU406 |
| B | ARG409 |
| B | LYS500 |
| B | OXD602 |
| B | HOH709 |
| B | HOH717 |
| B | HOH727 |
| B | HOH831 |
| B | HOH836 |
| B | HOH914 |
| B | HOH934 |
| site_id | AC4 |
| Number of Residues | 9 |
| Details | binding site for residue OXD B 602 |
| Chain | Residue |
| B | VAL215 |
| B | HIS216 |
| B | SER289 |
| B | ALA313 |
| B | MET314 |
| B | THR315 |
| B | HIS319 |
| B | LYS500 |
| B | AMP601 |
Functional Information from PROSITE/UniProt
| site_id | PS00455 |
| Number of Residues | 12 |
| Details | AMP_BINDING Putative AMP-binding domain signature. FLHTSGTTSrPK |
| Chain | Residue | Details |
| A | PHE167-LYS178 |
Functional Information from SwissProt/UniProt
| site_id | SWS_FT_FI1 |
| Number of Residues | 138 |
| Details | Region: {"description":"SBD1","evidences":[{"source":"UniProtKB","id":"Q42524","evidenceCode":"ECO:0000250"}]} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI2 |
| Number of Residues | 126 |
| Details | Region: {"description":"SBD2","evidences":[{"source":"UniProtKB","id":"Q42524","evidenceCode":"ECO:0000250"}]} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI3 |
| Number of Residues | 18 |
| Details | Binding site: {"evidences":[{"source":"PubMed","id":"27326693","evidenceCode":"ECO:0000269"},{"source":"PDB","id":"5IE2","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"5IE3","evidenceCode":"ECO:0007744"}]} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI4 |
| Number of Residues | 4 |
| Details | Binding site: {"evidences":[{"source":"PubMed","id":"27326693","evidenceCode":"ECO:0000269"},{"source":"PDB","id":"5IE2","evidenceCode":"ECO:0007744"}]} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI5 |
| Number of Residues | 4 |
| Details | Binding site: {"evidences":[{"source":"UniProtKB","id":"O24146","evidenceCode":"ECO:0000250"}]} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI6 |
| Number of Residues | 8 |
| Details | Binding site: {"evidences":[{"source":"PubMed","id":"27326693","evidenceCode":"ECO:0000269"},{"source":"PDB","id":"5IE3","evidenceCode":"ECO:0007744"}]} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI7 |
| Number of Residues | 2 |
| Details | Modified residue: {"description":"N-acetylmethionine","evidences":[{"source":"PubMed","id":"22223895","evidenceCode":"ECO:0007744"}]} |
| Chain | Residue | Details |
