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5ICF

Crystal structure of (S)-norcoclaurine 6-O-methyltransferase with S-adenosyl-L-homocysteine and sanguinarine

Functional Information from GO Data
ChainGOidnamespacecontents
A0008168molecular_functionmethyltransferase activity
A0008171molecular_functionO-methyltransferase activity
A0009820biological_processalkaloid metabolic process
A0016740molecular_functiontransferase activity
A0030786molecular_function(RS)-norcoclaurine 6-O-methyltransferase activity
A0032259biological_processmethylation
A0046983molecular_functionprotein dimerization activity
Functional Information from PDB Data
site_idAC1
Number of Residues21
Detailsbinding site for residue SAH A 401
ChainResidue
ATRP149
ALYS252
ACYS253
AILE254
AASP257
ATRP258
AHOH525
AHOH574
AHOH598
AHOH601
AHOH609
AMET166
AHOH610
AHOH622
ATHR170
AGLY195
AASP218
ALEU219
AVAL222
AASP238
AMET239

site_idAC2
Number of Residues12
Detailsbinding site for residue SAU A 402
ChainResidue
ATRP16
ATYR20
ATHR113
APHE119
APHE140
APHE162
AGLY165
AMET166
AASP169
AASP306
AASN310
AEDO412

site_idAC3
Number of Residues4
Detailsbinding site for residue K A 403
ChainResidue
AHIS124
AHIS124
AHOH605
AHOH605

site_idAC4
Number of Residues3
Detailsbinding site for residue K A 404
ChainResidue
AASP289
ATHR297
AARG300

site_idAC5
Number of Residues4
Detailsbinding site for residue NA A 405
ChainResidue
AGLN12
ATRP16
ATYR296
AHOH683

site_idAC6
Number of Residues7
Detailsbinding site for residue EDO A 406
ChainResidue
AASN38
AHIS41
AASN42
AVAL100
ALYS101
ATYR242
AHOH510

site_idAC7
Number of Residues5
Detailsbinding site for residue EDO A 407
ChainResidue
AILE40
AGLY44
ASER45
AGLY91
ALEU92

site_idAC8
Number of Residues3
Detailsbinding site for residue EDO A 408
ChainResidue
AHIS75
AMET76
ALYS298

site_idAC9
Number of Residues3
Detailsbinding site for residue EDO A 409
ChainResidue
APRO220
AHIS221
AHOH541

site_idAD1
Number of Residues4
Detailsbinding site for residue EDO A 410
ChainResidue
AHIS55
AASN233
ASER234
AILE235

site_idAD2
Number of Residues8
Detailsbinding site for residue EDO A 411
ChainResidue
ASER10
AHIS155
AHIS294
APRO295
AHOH504
AHOH513
AHOH552
AHOH615

site_idAD3
Number of Residues7
Detailsbinding site for residue EDO A 412
ChainResidue
APHE162
AMET166
AASP306
AMET307
ATHR311
ASAU402
AHOH536

site_idAD4
Number of Residues3
Detailsbinding site for residue EDO A 413
ChainResidue
ALYS117
ALYS117
AASP118

site_idAD5
Number of Residues9
Detailsbinding site for residue EDO A 414
ChainResidue
AHIS55
ALEU56
ATHR190
ALYS213
ATHR215
AASN233
AASN245
AALA246
AHOH501

site_idAD6
Number of Residues5
Detailsbinding site for residue EDO A 415
ChainResidue
ATRP258
AASP259
AGLU262
ATHR311
AGLY312

site_idAD7
Number of Residues3
Detailsbinding site for residue EDO A 416
ChainResidue
AHOH515
AHOH667
AASP116

site_idAD8
Number of Residues4
Detailsbinding site for residue EDO A 417
ChainResidue
AASP116
ALYS117
AASP118
ALYS158

site_idAD9
Number of Residues4
Detailsbinding site for residue EDO A 418
ChainResidue
AASP150
AGLU154
AHIS294
ADMS420

site_idAE1
Number of Residues6
Detailsbinding site for residue DMS A 419
ChainResidue
AASN5
APRO156
AASN159
AGLN160
ATYR350
AHOH647

site_idAE2
Number of Residues10
Detailsbinding site for residue DMS A 420
ChainResidue
ALEU9
AGLU154
ATYR296
AARG300
AHIS337
ASER339
AALA340
AEDO418
AHOH511
AHOH565

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues1
DetailsActive site: {"description":"Proton acceptor","evidences":[{"source":"PROSITE-ProRule","id":"PRU01020","evidenceCode":"ECO:0000255"}]}
ChainResidueDetails

site_idSWS_FT_FI2
Number of Residues5
DetailsBinding site: {"evidences":[{"source":"PubMed","id":"27232113","evidenceCode":"ECO:0000269"},{"source":"PDB","id":"5ICC","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"5ICE","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"5ICF","evidenceCode":"ECO:0007744"}]}
ChainResidueDetails

site_idSWS_FT_FI3
Number of Residues6
DetailsBinding site: {"evidences":[{"source":"PubMed","id":"27232113","evidenceCode":"ECO:0000269"},{"source":"PDB","id":"5ICE","evidenceCode":"ECO:0007744"}]}
ChainResidueDetails

site_idSWS_FT_FI4
Number of Residues1
DetailsBinding site: {"evidences":[{"source":"PROSITE-ProRule","id":"PRU01020","evidenceCode":"ECO:0000255"},{"source":"PubMed","id":"27232113","evidenceCode":"ECO:0000269"},{"source":"PDB","id":"5ICC","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"5ICE","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"5ICF","evidenceCode":"ECO:0007744"}]}
ChainResidueDetails

245663

PDB entries from 2025-12-03

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