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5I3M

Crystal structure of the catalytic domain of MMP-12 in complex with a selective sugar-conjugated thiourea-linked carboxylate zinc-chelator water-soluble inhibitor (DC31).

Functional Information from GO Data
ChainGOidnamespacecontents
A0004222molecular_functionmetalloendopeptidase activity
A0006508biological_processproteolysis
A0008237molecular_functionmetallopeptidase activity
A0008270molecular_functionzinc ion binding
A0031012cellular_componentextracellular matrix
B0004222molecular_functionmetalloendopeptidase activity
B0006508biological_processproteolysis
B0008237molecular_functionmetallopeptidase activity
B0008270molecular_functionzinc ion binding
B0031012cellular_componentextracellular matrix
C0004222molecular_functionmetalloendopeptidase activity
C0006508biological_processproteolysis
C0008237molecular_functionmetallopeptidase activity
C0008270molecular_functionzinc ion binding
C0031012cellular_componentextracellular matrix
D0004222molecular_functionmetalloendopeptidase activity
D0006508biological_processproteolysis
D0008237molecular_functionmetallopeptidase activity
D0008270molecular_functionzinc ion binding
D0031012cellular_componentextracellular matrix
Functional Information from PDB Data
site_idAC1
Number of Residues17
Detailsbinding site for residue 67F A 301
ChainResidue
AILE180
AVAL235
APHE237
APRO238
ATHR239
ATYR240
AZN302
AHOH455
CGLU128
ALEU181
AALA182
AHIS183
ALEU214
AHIS218
AGLN219
AHIS222
AHIS228

site_idAC2
Number of Residues4
Detailsbinding site for residue ZN A 302
ChainResidue
AHIS218
AHIS222
AHIS228
A67F301

site_idAC3
Number of Residues4
Detailsbinding site for residue ZN A 303
ChainResidue
AHIS168
AASP170
AHIS183
AHIS196

site_idAC4
Number of Residues5
Detailsbinding site for residue CA A 304
ChainResidue
AASP158
AGLY190
AGLY192
AASP194
AHOH403

site_idAC5
Number of Residues5
Detailsbinding site for residue CA A 305
ChainResidue
AASP124
AGLU199
AGLU201
AHOH452
AHOH462

site_idAC6
Number of Residues6
Detailsbinding site for residue CA A 306
ChainResidue
AASP175
AGLY176
AGLY178
AILE180
AASP198
AGLU201

site_idAC7
Number of Residues2
Detailsbinding site for residue DMS A 307
ChainResidue
AHIS172
APHE185

site_idAC8
Number of Residues5
Detailsbinding site for residue PGO A 308
ChainResidue
ALYS136
ATHR205
APHE213
AHOH439
AHOH472

site_idAC9
Number of Residues17
Detailsbinding site for residue 67F B 301
ChainResidue
BILE180
BLEU181
BALA182
BHIS183
BLEU214
BTHR215
BHIS218
BGLN219
BHIS222
BHIS228
BVAL235
BPHE237
BPRO238
BTYR240
BZN302
BHOH450
DASP231

site_idAD1
Number of Residues4
Detailsbinding site for residue ZN B 302
ChainResidue
BHIS218
BHIS222
BHIS228
B67F301

site_idAD2
Number of Residues4
Detailsbinding site for residue ZN B 303
ChainResidue
BHIS168
BASP170
BHIS183
BHIS196

site_idAD3
Number of Residues6
Detailsbinding site for residue CA B 304
ChainResidue
BASP158
BGLY190
BGLY192
BASP194
BHOH430
BHOH444

site_idAD4
Number of Residues5
Detailsbinding site for residue CA B 305
ChainResidue
BASP124
BGLU199
BGLU201
BHOH467
BHOH471

site_idAD5
Number of Residues6
Detailsbinding site for residue CA B 306
ChainResidue
BASP175
BGLY176
BGLY178
BILE180
BASP198
BGLU201

site_idAD6
Number of Residues3
Detailsbinding site for residue PGO B 307
ChainResidue
BLEU226
BSER229
BASP253

site_idAD7
Number of Residues2
Detailsbinding site for residue DIO B 308
ChainResidue
BALA184
BPHE185

site_idAD8
Number of Residues3
Detailsbinding site for residue DIO B 309
ChainResidue
BALA133
BTHR205
BHOH442

site_idAD9
Number of Residues19
Detailsbinding site for residue 67F C 301
ChainResidue
CASP175
CGLY179
CILE180
CLEU181
CALA182
CHIS183
CLEU214
CHIS218
CGLN219
CHIS222
CHIS228
CVAL235
CPHE237
CPRO238
CTYR240
CZN302
CHOH409
CHOH420
AARG135

site_idAE1
Number of Residues4
Detailsbinding site for residue ZN C 302
ChainResidue
CHIS218
CHIS222
CHIS228
C67F301

site_idAE2
Number of Residues4
Detailsbinding site for residue ZN C 303
ChainResidue
CHIS168
CASP170
CHIS183
CHIS196

site_idAE3
Number of Residues6
Detailsbinding site for residue CA C 304
ChainResidue
CASP158
CGLY190
CGLY192
CASP194
CHOH410
CHOH437

site_idAE4
Number of Residues5
Detailsbinding site for residue CA C 305
ChainResidue
CASP124
CGLU199
CGLU201
CHOH468
CHOH469

site_idAE5
Number of Residues6
Detailsbinding site for residue CA C 306
ChainResidue
CASP175
CGLY176
CGLY178
CILE180
CASP198
CGLU201

site_idAE6
Number of Residues6
Detailsbinding site for residue EDO C 307
ChainResidue
CTHR205
CPHE213
CILE245
CHOH407
CHOH435
CHOH470

site_idAE7
Number of Residues4
Detailsbinding site for residue DIO C 308
ChainResidue
CHIS183
CALA184
CPHE185
CHOH431

site_idAE8
Number of Residues19
Detailsbinding site for residue 67F D 301
ChainResidue
BPRO232
BHOH423
DILE180
DLEU181
DALA182
DHIS183
DLEU214
DHIS218
DGLN219
DHIS222
DHIS228
DVAL235
DPHE237
DPRO238
DTHR239
DTYR240
DZN302
DDMS307
DHOH486

site_idAE9
Number of Residues4
Detailsbinding site for residue ZN D 302
ChainResidue
DHIS218
DHIS222
DHIS228
D67F301

site_idAF1
Number of Residues4
Detailsbinding site for residue ZN D 303
ChainResidue
DHIS168
DASP170
DHIS183
DHIS196

site_idAF2
Number of Residues6
Detailsbinding site for residue CA D 304
ChainResidue
DASP158
DGLY190
DGLY192
DASP194
DHOH415
DHOH440

site_idAF3
Number of Residues5
Detailsbinding site for residue CA D 305
ChainResidue
DASP124
DGLU199
DGLU201
DHOH429
DHOH450

site_idAF4
Number of Residues6
Detailsbinding site for residue CA D 306
ChainResidue
DASP175
DGLY176
DGLY178
DILE180
DASP198
DGLU201

site_idAF5
Number of Residues3
Detailsbinding site for residue DMS D 307
ChainResidue
DHIS172
DALA184
D67F301

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues4
DetailsActive site: {}
ChainResidueDetails

site_idSWS_FT_FI2
Number of Residues76
DetailsBinding site: {}
ChainResidueDetails

246905

PDB entries from 2025-12-31

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