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5I2M

CRYSTAL STRUCTURE OF VSV-INDIANA (MUDD-SUMMERS STRAIN) GLYCOPROTEIN UNDER ITS ACIDIC CONFORMATION

Replaces:  2CMZ
Functional Information from GO Data
ChainGOidnamespacecontents
A0019031cellular_componentviral envelope
B0019031cellular_componentviral envelope
C0019031cellular_componentviral envelope
Functional Information from PDB Data
site_idAC1
Number of Residues7
Detailsbinding site for residue PE4 A 501
ChainResidue
ALYS220
ATRP227
APHE245
AALA246
AARG249
APHE250
AGLU252

site_idAC2
Number of Residues10
Detailsbinding site for residue PE4 B 501
ChainResidue
BLYS220
BTRP227
BALA246
BARG249
BPHE250
BGLU252
BHOH658
BHOH749
AGLU327
AHOH673

site_idAC3
Number of Residues10
Detailsbinding site for residue PE4 B 502
ChainResidue
BILE339
BLEU340
BSER341
BARG342
BVAL344
BARG375
BTHR376
BSER377
BSER378
BGLY379

site_idAC4
Number of Residues6
Detailsbinding site for residue PE4 B 503
ChainResidue
BPRO338
BILE339
BSER378
BLYS381
BPHE382
CHIS33

site_idAC5
Number of Residues9
Detailsbinding site for residue PE4 C 501
ChainResidue
CASN20
CLYS220
CTRP227
CPHE245
CALA246
CARG249
CPHE250
CGLU252
CHOH645

site_idAC6
Number of Residues5
Detailsbinding site for residue CA C 502
ChainResidue
CGLU191
CASP192
CASP192
CGLU194
CHOH670

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues6
DetailsSITE: Involved in the interaction with host LDL receptor
ChainResidueDetails
ALYS63
APRO370
BLYS63
BPRO370
CLYS63
CPRO370

site_idSWS_FT_FI2
Number of Residues6
DetailsSITE: pH sensor in the pre-fusion state => ECO:0000269|PubMed:17289996
ChainResidueDetails
ALYS76
AASP178
BLYS76
BASP178
CLYS76
CASP178

site_idSWS_FT_FI3
Number of Residues3
DetailsMOD_RES: N6-methyllysine; by host => ECO:0007744|PDB:5OY9
ChainResidueDetails
ATHR66
BTHR66
CTHR66

site_idSWS_FT_FI4
Number of Residues3
DetailsCARBOHYD: N-linked (GlcNAc...) asparagine; by host => ECO:0000269|PubMed:17289996, ECO:0007744|PDB:5I2S
ChainResidueDetails
ASER179
BSER179
CSER179

site_idSWS_FT_FI5
Number of Residues3
DetailsCARBOHYD: N-linked (GlcNAc...) asparagine; by host => ECO:0000269|PubMed:17289996, ECO:0000269|PubMed:29531262, ECO:0007744|PDB:5I2S, ECO:0007744|PDB:5OY9
ChainResidueDetails
AALA336
BALA336
CALA336

237992

PDB entries from 2025-06-25

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