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5HMW

Dengue serotype 3 RNA-dependent RNA polymerase bound to compound 5

Functional Information from GO Data
ChainGOidnamespacecontents
A0003968molecular_functionRNA-directed RNA polymerase activity
A0005524molecular_functionATP binding
A0039694biological_processviral RNA genome replication
Functional Information from PDB Data
site_idAC1
Number of Residues4
Detailsbinding site for residue ZN A 1001
ChainResidue
AHIS712
AHIS714
ACYS728
ACYS847

site_idAC2
Number of Residues4
Detailsbinding site for residue ZN A 1002
ChainResidue
AGLU437
AHIS441
ACYS446
ACYS449

site_idAC3
Number of Residues12
Detailsbinding site for residue LNW A 1003
ChainResidue
ACYS709
AHIS711
AARG729
ATYR766
ATHR794
ASER796
AHIS798
AALA799
ATRP803
AHOH1114
AHOH1154
ALEU511

site_idAC4
Number of Residues8
Detailsbinding site for residue LNW A 1004
ChainResidue
AARG770
ALEU774
ATYR838
AILE851
AGLY852
AARG856
AARG888
AHOH1138

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues150
DetailsDomain: {"description":"RdRp catalytic","evidences":[{"source":"PROSITE-ProRule","id":"PRU00539","evidenceCode":"ECO:0000255"}]}
ChainResidueDetails

site_idSWS_FT_FI2
Number of Residues2
DetailsRegion: {"description":"Interaction with host KPNA2","evidences":[{"source":"UniProtKB","id":"P12823","evidenceCode":"ECO:0000250"}]}
ChainResidueDetails

site_idSWS_FT_FI3
Number of Residues47
DetailsMotif: {"description":"Bipartite nuclear localization signal","evidences":[{"source":"UniProtKB","id":"P12823","evidenceCode":"ECO:0000250"}]}
ChainResidueDetails

site_idSWS_FT_FI4
Number of Residues7
DetailsBinding site: {"evidences":[{"source":"PubMed","id":"17301146","evidenceCode":"ECO:0000269"}]}
ChainResidueDetails

site_idSWS_FT_FI5
Number of Residues1
DetailsSite: {"description":"Important for NS5 nuclear subcellular location","evidences":[{"source":"UniProtKB","id":"P12823","evidenceCode":"ECO:0000250"}]}
ChainResidueDetails

250359

PDB entries from 2026-03-11

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