Summary Structural details Experimental details Functional details Sequence Neighbor History Downloads

5HK4

Structure function studies of R. palustris RubisCO (A47V-M331A mutant)

Functional Information from GO Data

Chain	GOid	namespace	contents
A	0000287	molecular_function	magnesium ion binding
A	0004497	molecular_function	monooxygenase activity
A	0015977	biological_process	carbon fixation
A	0015979	biological_process	photosynthesis
A	0016829	molecular_function	lyase activity
A	0016984	molecular_function	ribulose-bisphosphate carboxylase activity
A	0019253	biological_process	reductive pentose-phosphate cycle
A	0046872	molecular_function	metal ion binding
B	0000287	molecular_function	magnesium ion binding
B	0004497	molecular_function	monooxygenase activity
B	0015977	biological_process	carbon fixation
B	0015979	biological_process	photosynthesis
B	0016829	molecular_function	lyase activity
B	0016984	molecular_function	ribulose-bisphosphate carboxylase activity
B	0019253	biological_process	reductive pentose-phosphate cycle
B	0046872	molecular_function	metal ion binding
C	0000287	molecular_function	magnesium ion binding
C	0004497	molecular_function	monooxygenase activity
C	0015977	biological_process	carbon fixation
C	0015979	biological_process	photosynthesis
C	0016829	molecular_function	lyase activity
C	0016984	molecular_function	ribulose-bisphosphate carboxylase activity
C	0019253	biological_process	reductive pentose-phosphate cycle
C	0046872	molecular_function	metal ion binding
D	0000287	molecular_function	magnesium ion binding
D	0004497	molecular_function	monooxygenase activity
D	0015977	biological_process	carbon fixation
D	0015979	biological_process	photosynthesis
D	0016829	molecular_function	lyase activity
D	0016984	molecular_function	ribulose-bisphosphate carboxylase activity
D	0019253	biological_process	reductive pentose-phosphate cycle
D	0046872	molecular_function	metal ion binding
E	0000287	molecular_function	magnesium ion binding
E	0004497	molecular_function	monooxygenase activity
E	0015977	biological_process	carbon fixation
E	0015979	biological_process	photosynthesis
E	0016829	molecular_function	lyase activity
E	0016984	molecular_function	ribulose-bisphosphate carboxylase activity
E	0019253	biological_process	reductive pentose-phosphate cycle
E	0046872	molecular_function	metal ion binding
F	0000287	molecular_function	magnesium ion binding
F	0004497	molecular_function	monooxygenase activity
F	0015977	biological_process	carbon fixation
F	0015979	biological_process	photosynthesis
F	0016829	molecular_function	lyase activity
F	0016984	molecular_function	ribulose-bisphosphate carboxylase activity
F	0019253	biological_process	reductive pentose-phosphate cycle
F	0046872	molecular_function	metal ion binding

Functional Information from PDB Data

site_id	AC1
Number of Residues	24
Details	binding site for residue CAP A 500

Chain	Residue
A	ILE165
A	LYS330
A	SER369
A	GLY370
A	GLY371
A	ALA393
A	GLY394
A	GLY395
A	MG501
A	HOH613
A	HOH632
A	LYS167
A	HOH689
A	HOH707
B	GLU49
B	THR54
B	ASN112
A	LYS169
A	KCX192
A	ASP194
A	GLU195
A	HIS288
A	ARG289
A	HIS322

site_id	AC2
Number of Residues	4
Details	binding site for residue MG A 501

Chain	Residue
A	KCX192
A	ASP194
A	GLU195
A	CAP500

site_id	AC3
Number of Residues	28
Details	binding site for residue CAP B 500

Chain	Residue
A	GLU49
A	THR54
A	ASN112
A	HOH675
B	ILE165
B	LYS167
B	LYS169
B	KCX192
B	ASP194
B	GLU195
B	HIS288
B	ARG289
B	HIS322
B	LYS330
B	SER369
B	GLY370
B	GLY371
B	ALA393
B	GLY394
B	GLY395
B	MG501
B	HOH604
B	HOH617
B	HOH619
B	HOH639
B	HOH642
B	HOH654
B	HOH691

site_id	AC4
Number of Residues	5
Details	binding site for residue MG B 501

Chain	Residue
B	LYS169
B	KCX192
B	ASP194
B	GLU195
B	CAP500

site_id	AC5
Number of Residues	24
Details	binding site for residue CAP C 500

Chain	Residue
C	ILE165
C	LYS167
C	LYS169
C	KCX192
C	ASP194
C	GLU195
C	HIS288
C	ARG289
C	HIS322
C	LYS330
C	SER369
C	GLY370
C	GLY371
C	ALA393
C	GLY394
C	GLY395
C	MG501
C	HOH608
C	HOH646
C	HOH658
C	HOH705
D	GLU49
D	THR54
D	ASN112

site_id	AC6
Number of Residues	5
Details	binding site for residue MG C 501

Chain	Residue
C	KCX192
C	ASP194
C	GLU195
C	CAP500
D	ASN112

site_id	AC7
Number of Residues	25
Details	binding site for residue CAP D 500

Chain	Residue
D	HIS288
D	ARG289
D	HIS322
D	LYS330
D	SER369
D	GLY370
D	GLY371
D	GLY394
D	GLY395
D	MG501
D	HOH610
D	HOH621
D	HOH623
D	HOH674
D	HOH690
D	HOH728
C	GLU49
C	THR54
C	ASN112
D	ILE165
D	LYS167
D	LYS169
D	KCX192
D	ASP194
D	GLU195

site_id	AC8
Number of Residues	5
Details	binding site for residue MG D 501

Chain	Residue
D	LYS169
D	KCX192
D	ASP194
D	GLU195
D	CAP500

site_id	AC9
Number of Residues	26
Details	binding site for residue CAP E 500

Chain	Residue
E	ILE165
E	LYS167
E	LYS169
E	KCX192
E	ASP194
E	GLU195
E	HIS288
E	ARG289
E	HIS322
E	LYS330
E	SER369
E	GLY370
E	GLY371
E	ALA393
E	GLY394
E	GLY395
E	MG501
E	HOH639
E	HOH643
E	HOH645
E	HOH653
E	HOH668
F	GLU49
F	THR54
F	ASN112
F	HOH609

site_id	AD1
Number of Residues	4
Details	binding site for residue MG E 501

Chain	Residue
E	KCX192
E	ASP194
E	GLU195
E	CAP500

site_id	AD2
Number of Residues	26
Details	binding site for residue CAP F 500

Chain	Residue
E	GLU49
E	THR54
E	ASN112
E	HOH628
F	ILE165
F	LYS167
F	LYS169
F	KCX192
F	ASP194
F	GLU195
F	HIS288
F	ARG289
F	HIS322
F	LYS330
F	SER369
F	GLY370
F	GLY371
F	GLY394
F	GLY395
F	MG501
F	HOH606
F	HOH612
F	HOH614
F	HOH693
F	HOH696
F	HOH719

site_id	AD3
Number of Residues	4
Details	binding site for residue MG F 501

Chain	Residue
F	KCX192
F	ASP194
F	GLU195
F	CAP500

Functional Information from PROSITE/UniProt

site_id	PS00157
Number of Residues	9
Details	RUBISCO_LARGE Ribulose bisphosphate carboxylase large chain active site. GgDFiKnDE

Chain	Residue	Details
A	GLY187-GLU195

Functional Information from SwissProt/UniProt

site_id	SWS_FT_FI1
Number of Residues	12
Details	ACT_SITE: Proton acceptor => ECO:0000255\|HAMAP-Rule:MF_01339

Chain	Residue	Details
A	LYS167
E	HIS288
F	LYS167
F	HIS288
A	HIS288
B	LYS167
B	HIS288
C	LYS167
C	HIS288
D	LYS167
D	HIS288
E	LYS167

site_id	SWS_FT_FI2
Number of Residues	6
Details	BINDING: in homodimeric partner => ECO:0000255\|HAMAP-Rule:MF_01339

Chain	Residue	Details
A	ASN112
B	ASN112
C	ASN112
D	ASN112
E	ASN112
F	ASN112

site_id	SWS_FT_FI3
Number of Residues	36
Details	BINDING: BINDING => ECO:0000255\|HAMAP-Rule:MF_01339

Chain	Residue	Details
A	LYS169
B	ARG289
B	HIS322
B	SER369
C	LYS169
C	ASP194
C	GLU195
C	ARG289
C	HIS322
C	SER369
D	LYS169
A	ASP194
D	ASP194
D	GLU195
D	ARG289
D	HIS322
D	SER369
E	LYS169
E	ASP194
E	GLU195
E	ARG289
E	HIS322
A	GLU195
E	SER369
F	LYS169
F	ASP194
F	GLU195
F	ARG289
F	HIS322
F	SER369
A	ARG289
A	HIS322
A	SER369
B	LYS169
B	ASP194
B	GLU195

site_id	SWS_FT_FI4
Number of Residues	6
Details	BINDING: via carbamate group => ECO:0000255\|HAMAP-Rule:MF_01339

Chain	Residue	Details
A	KCX192
B	KCX192
C	KCX192
D	KCX192
E	KCX192
F	KCX192

site_id	SWS_FT_FI5
Number of Residues	6
Details	SITE: Transition state stabilizer => ECO:0000255\|HAMAP-Rule:MF_01339

Chain	Residue	Details
A	LYS330
B	LYS330
C	LYS330
D	LYS330
E	LYS330
F	LYS330

site_id	SWS_FT_FI6
Number of Residues	6
Details	MOD_RES: N6-carboxylysine => ECO:0000255\|HAMAP-Rule:MF_01339

Chain	Residue	Details
A	KCX192
B	KCX192
C	KCX192
D	KCX192
E	KCX192
F	KCX192

		Sequence (fasta)
		PDBx/mmCIF
		PDBML format (no-atom)
		PDB format (full)
		Validation report (PDF)
		EDMap 2fo-fc (MTZ)