5H8L
Crystal structure of Medicago truncatula N-carbamoylputrescine amidohydrolase (MtCPA) C158S mutant in complex with putrescine
Functional Information from GO Data
Chain | GOid | namespace | contents |
A | 0006596 | biological_process | polyamine biosynthetic process |
A | 0006807 | biological_process | obsolete nitrogen compound metabolic process |
A | 0016787 | molecular_function | hydrolase activity |
A | 0016810 | molecular_function | hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds |
A | 0033388 | biological_process | putrescine biosynthetic process from arginine |
A | 0050126 | molecular_function | N-carbamoylputrescine amidase activity |
B | 0006596 | biological_process | polyamine biosynthetic process |
B | 0006807 | biological_process | obsolete nitrogen compound metabolic process |
B | 0016787 | molecular_function | hydrolase activity |
B | 0016810 | molecular_function | hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds |
B | 0033388 | biological_process | putrescine biosynthetic process from arginine |
B | 0050126 | molecular_function | N-carbamoylputrescine amidase activity |
C | 0006596 | biological_process | polyamine biosynthetic process |
C | 0006807 | biological_process | obsolete nitrogen compound metabolic process |
C | 0016787 | molecular_function | hydrolase activity |
C | 0016810 | molecular_function | hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds |
C | 0033388 | biological_process | putrescine biosynthetic process from arginine |
C | 0050126 | molecular_function | N-carbamoylputrescine amidase activity |
D | 0006596 | biological_process | polyamine biosynthetic process |
D | 0006807 | biological_process | obsolete nitrogen compound metabolic process |
D | 0016787 | molecular_function | hydrolase activity |
D | 0016810 | molecular_function | hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds |
D | 0033388 | biological_process | putrescine biosynthetic process from arginine |
D | 0050126 | molecular_function | N-carbamoylputrescine amidase activity |
E | 0006596 | biological_process | polyamine biosynthetic process |
E | 0006807 | biological_process | obsolete nitrogen compound metabolic process |
E | 0016787 | molecular_function | hydrolase activity |
E | 0016810 | molecular_function | hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds |
E | 0033388 | biological_process | putrescine biosynthetic process from arginine |
E | 0050126 | molecular_function | N-carbamoylputrescine amidase activity |
F | 0006596 | biological_process | polyamine biosynthetic process |
F | 0006807 | biological_process | obsolete nitrogen compound metabolic process |
F | 0016787 | molecular_function | hydrolase activity |
F | 0016810 | molecular_function | hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds |
F | 0033388 | biological_process | putrescine biosynthetic process from arginine |
F | 0050126 | molecular_function | N-carbamoylputrescine amidase activity |
G | 0006596 | biological_process | polyamine biosynthetic process |
G | 0006807 | biological_process | obsolete nitrogen compound metabolic process |
G | 0016787 | molecular_function | hydrolase activity |
G | 0016810 | molecular_function | hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds |
G | 0033388 | biological_process | putrescine biosynthetic process from arginine |
G | 0050126 | molecular_function | N-carbamoylputrescine amidase activity |
H | 0006596 | biological_process | polyamine biosynthetic process |
H | 0006807 | biological_process | obsolete nitrogen compound metabolic process |
H | 0016787 | molecular_function | hydrolase activity |
H | 0016810 | molecular_function | hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds |
H | 0033388 | biological_process | putrescine biosynthetic process from arginine |
H | 0050126 | molecular_function | N-carbamoylputrescine amidase activity |
I | 0006596 | biological_process | polyamine biosynthetic process |
I | 0006807 | biological_process | obsolete nitrogen compound metabolic process |
I | 0016787 | molecular_function | hydrolase activity |
I | 0016810 | molecular_function | hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds |
I | 0033388 | biological_process | putrescine biosynthetic process from arginine |
I | 0050126 | molecular_function | N-carbamoylputrescine amidase activity |
J | 0006596 | biological_process | polyamine biosynthetic process |
J | 0006807 | biological_process | obsolete nitrogen compound metabolic process |
J | 0016787 | molecular_function | hydrolase activity |
J | 0016810 | molecular_function | hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds |
J | 0033388 | biological_process | putrescine biosynthetic process from arginine |
J | 0050126 | molecular_function | N-carbamoylputrescine amidase activity |
K | 0006596 | biological_process | polyamine biosynthetic process |
K | 0006807 | biological_process | obsolete nitrogen compound metabolic process |
K | 0016787 | molecular_function | hydrolase activity |
K | 0016810 | molecular_function | hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds |
K | 0033388 | biological_process | putrescine biosynthetic process from arginine |
K | 0050126 | molecular_function | N-carbamoylputrescine amidase activity |
L | 0006596 | biological_process | polyamine biosynthetic process |
L | 0006807 | biological_process | obsolete nitrogen compound metabolic process |
L | 0016787 | molecular_function | hydrolase activity |
L | 0016810 | molecular_function | hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds |
L | 0033388 | biological_process | putrescine biosynthetic process from arginine |
L | 0050126 | molecular_function | N-carbamoylputrescine amidase activity |
M | 0006596 | biological_process | polyamine biosynthetic process |
M | 0006807 | biological_process | obsolete nitrogen compound metabolic process |
M | 0016787 | molecular_function | hydrolase activity |
M | 0016810 | molecular_function | hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds |
M | 0033388 | biological_process | putrescine biosynthetic process from arginine |
M | 0050126 | molecular_function | N-carbamoylputrescine amidase activity |
N | 0006596 | biological_process | polyamine biosynthetic process |
N | 0006807 | biological_process | obsolete nitrogen compound metabolic process |
N | 0016787 | molecular_function | hydrolase activity |
N | 0016810 | molecular_function | hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds |
N | 0033388 | biological_process | putrescine biosynthetic process from arginine |
N | 0050126 | molecular_function | N-carbamoylputrescine amidase activity |
O | 0006596 | biological_process | polyamine biosynthetic process |
O | 0006807 | biological_process | obsolete nitrogen compound metabolic process |
O | 0016787 | molecular_function | hydrolase activity |
O | 0016810 | molecular_function | hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds |
O | 0033388 | biological_process | putrescine biosynthetic process from arginine |
O | 0050126 | molecular_function | N-carbamoylputrescine amidase activity |
P | 0006596 | biological_process | polyamine biosynthetic process |
P | 0006807 | biological_process | obsolete nitrogen compound metabolic process |
P | 0016787 | molecular_function | hydrolase activity |
P | 0016810 | molecular_function | hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds |
P | 0033388 | biological_process | putrescine biosynthetic process from arginine |
P | 0050126 | molecular_function | N-carbamoylputrescine amidase activity |
Functional Information from PDB Data
site_id | AC1 |
Number of Residues | 2 |
Details | binding site for residue GOL A 401 |
Chain | Residue |
A | THR75 |
A | ARG78 |
site_id | AC2 |
Number of Residues | 2 |
Details | binding site for residue GOL A 402 |
Chain | Residue |
A | GLN57 |
A | GLY185 |
site_id | AC3 |
Number of Residues | 6 |
Details | binding site for residue EDO A 403 |
Chain | Residue |
C | HOH615 |
A | ARG283 |
A | PRO285 |
A | ASP286 |
A | HOH526 |
A | HOH558 |
site_id | AC4 |
Number of Residues | 9 |
Details | binding site for residue PUT B 401 |
Chain | Residue |
A | TRP277 |
B | TYR130 |
B | SER158 |
B | ALA183 |
B | GLU187 |
B | HOH506 |
B | HOH523 |
B | HOH560 |
B | HOH593 |
site_id | AC5 |
Number of Residues | 6 |
Details | binding site for residue GOL B 402 |
Chain | Residue |
A | MET273 |
A | TRP277 |
B | HIS198 |
B | HOH517 |
B | HOH535 |
B | HOH731 |
site_id | AC6 |
Number of Residues | 6 |
Details | binding site for residue GOL B 403 |
Chain | Residue |
B | GLU51 |
B | PHE55 |
B | ARG66 |
B | HOH536 |
B | HOH594 |
B | HOH621 |
site_id | AC7 |
Number of Residues | 1 |
Details | binding site for residue EDO B 404 |
Chain | Residue |
B | ILE249 |
site_id | AC8 |
Number of Residues | 4 |
Details | binding site for residue EDO B 405 |
Chain | Residue |
A | HOH564 |
B | GLN204 |
B | GLU248 |
B | ILE249 |
site_id | AC9 |
Number of Residues | 9 |
Details | binding site for residue PUT C 401 |
Chain | Residue |
C | TYR130 |
C | SER158 |
C | ALA183 |
C | GLU187 |
C | HOH523 |
C | HOH533 |
C | HOH564 |
C | HOH573 |
D | TRP277 |
site_id | AD1 |
Number of Residues | 7 |
Details | binding site for residue GOL C 402 |
Chain | Residue |
C | MET273 |
C | TRP277 |
C | HOH540 |
C | HOH639 |
C | HOH747 |
D | SER195 |
D | HIS198 |
site_id | AD2 |
Number of Residues | 4 |
Details | binding site for residue GOL C 403 |
Chain | Residue |
C | THR75 |
C | ARG78 |
C | HOH542 |
C | HOH602 |
site_id | AD3 |
Number of Residues | 6 |
Details | binding site for residue EDO C 404 |
Chain | Residue |
C | PRO285 |
C | ASP286 |
C | HOH530 |
C | HOH584 |
C | HOH742 |
F | HOH615 |
site_id | AD4 |
Number of Residues | 7 |
Details | binding site for residue GOL D 401 |
Chain | Residue |
C | HIS198 |
D | MET273 |
D | TRP277 |
D | HOH502 |
D | HOH648 |
D | HOH654 |
D | HOH760 |
site_id | AD5 |
Number of Residues | 9 |
Details | binding site for residue PUT D 402 |
Chain | Residue |
C | TRP277 |
D | SER158 |
D | TRP159 |
D | ALA183 |
D | GLU187 |
D | HOH539 |
D | HOH554 |
D | HOH564 |
D | HOH635 |
site_id | AD6 |
Number of Residues | 6 |
Details | binding site for residue GOL D 403 |
Chain | Residue |
C | ARG201 |
D | GLN204 |
D | GLU248 |
D | ILE249 |
D | HOH639 |
D | HOH686 |
site_id | AD7 |
Number of Residues | 6 |
Details | binding site for residue EDO D 404 |
Chain | Residue |
A | HOH557 |
C | VAL300 |
D | PRO285 |
D | ASP286 |
D | HOH631 |
D | HOH700 |
site_id | AD8 |
Number of Residues | 2 |
Details | binding site for residue EDO D 405 |
Chain | Residue |
D | HOH590 |
D | HOH703 |
site_id | AD9 |
Number of Residues | 4 |
Details | binding site for residue PEG D 406 |
Chain | Residue |
D | ASP112 |
D | THR114 |
D | HOH574 |
D | HOH592 |
site_id | AE1 |
Number of Residues | 8 |
Details | binding site for residue PUT E 401 |
Chain | Residue |
E | HOH540 |
E | HOH552 |
E | HOH570 |
F | TRP277 |
F | HOH510 |
E | SER158 |
E | ALA183 |
E | GLU187 |
site_id | AE2 |
Number of Residues | 6 |
Details | binding site for residue GOL E 402 |
Chain | Residue |
E | HIS198 |
E | HOH505 |
E | HOH521 |
E | HOH667 |
F | MET273 |
F | TRP277 |
site_id | AE3 |
Number of Residues | 5 |
Details | binding site for residue GOL E 403 |
Chain | Residue |
E | MET273 |
E | TRP277 |
E | HOH510 |
F | ILE193 |
F | HIS198 |
site_id | AE4 |
Number of Residues | 5 |
Details | binding site for residue GOL E 404 |
Chain | Residue |
E | SER23 |
E | THR75 |
E | ARG78 |
E | HOH516 |
E | HOH677 |
site_id | AE5 |
Number of Residues | 1 |
Details | binding site for residue GOL E 405 |
Chain | Residue |
E | GLY113 |
site_id | AE6 |
Number of Residues | 7 |
Details | binding site for residue PUT F 401 |
Chain | Residue |
F | TYR130 |
F | SER158 |
F | ALA183 |
F | GLU187 |
F | HOH502 |
F | HOH539 |
F | HOH566 |
site_id | AE7 |
Number of Residues | 4 |
Details | binding site for residue GOL F 402 |
Chain | Residue |
F | SER23 |
F | PRO74 |
F | THR75 |
F | ARG78 |
site_id | AE8 |
Number of Residues | 7 |
Details | binding site for residue EDO F 403 |
Chain | Residue |
D | HOH671 |
E | VAL300 |
F | PRO285 |
F | ASP286 |
F | HOH553 |
F | HOH615 |
F | HOH650 |
site_id | AE9 |
Number of Residues | 3 |
Details | binding site for residue EDO F 404 |
Chain | Residue |
F | THR24 |
F | THR27 |
F | HOH575 |
site_id | AF1 |
Number of Residues | 9 |
Details | binding site for residue PUT G 401 |
Chain | Residue |
G | TYR130 |
G | SER158 |
G | ALA183 |
G | GLU187 |
G | HOH524 |
G | HOH541 |
G | HOH570 |
G | HOH581 |
H | TRP277 |
site_id | AF2 |
Number of Residues | 3 |
Details | binding site for residue GOL G 402 |
Chain | Residue |
G | HIS198 |
H | MET273 |
H | TRP277 |
site_id | AF3 |
Number of Residues | 7 |
Details | binding site for residue GOL G 403 |
Chain | Residue |
G | LYS256 |
G | GLU257 |
G | HOH517 |
G | HOH590 |
L | LEU32 |
L | GLU258 |
L | HOH630 |
site_id | AF4 |
Number of Residues | 4 |
Details | binding site for residue GOL I 401 |
Chain | Residue |
I | SER23 |
I | THR75 |
I | ARG78 |
I | HOH551 |
site_id | AF5 |
Number of Residues | 5 |
Details | binding site for residue EDO I 402 |
Chain | Residue |
I | PRO285 |
I | ASP286 |
I | HOH549 |
I | HOH620 |
J | VAL300 |
site_id | AF6 |
Number of Residues | 2 |
Details | binding site for residue EDO I 403 |
Chain | Residue |
I | GLY185 |
I | HOH628 |
site_id | AF7 |
Number of Residues | 9 |
Details | binding site for residue PUT J 401 |
Chain | Residue |
I | TRP277 |
I | HOH535 |
J | TYR130 |
J | SER158 |
J | ALA183 |
J | GLU187 |
J | HOH545 |
J | HOH546 |
J | HOH581 |
site_id | AF8 |
Number of Residues | 6 |
Details | binding site for residue GOL J 402 |
Chain | Residue |
I | MET273 |
I | TRP277 |
J | HIS198 |
J | HOH514 |
J | HOH618 |
J | HOH723 |
site_id | AF9 |
Number of Residues | 5 |
Details | binding site for residue GOL J 403 |
Chain | Residue |
J | ALA171 |
J | ARG274 |
J | PHE280 |
J | HOH509 |
J | HOH638 |
site_id | AG1 |
Number of Residues | 6 |
Details | binding site for residue GOL J 404 |
Chain | Residue |
J | GLU51 |
J | PHE55 |
J | ARG66 |
J | HOH503 |
J | HOH550 |
J | HOH552 |
site_id | AG2 |
Number of Residues | 9 |
Details | binding site for residue PUT K 401 |
Chain | Residue |
K | TYR130 |
K | SER158 |
K | ALA183 |
K | GLU187 |
K | HOH506 |
K | HOH549 |
K | HOH551 |
K | HOH590 |
L | TRP277 |
site_id | AG3 |
Number of Residues | 6 |
Details | binding site for residue GOL K 402 |
Chain | Residue |
K | HIS198 |
K | HOH543 |
K | HOH580 |
K | HOH726 |
L | MET273 |
L | TRP277 |
site_id | AG4 |
Number of Residues | 6 |
Details | binding site for residue GOL K 403 |
Chain | Residue |
K | MET273 |
K | TRP277 |
K | HOH505 |
K | HOH527 |
L | SER195 |
L | HIS198 |
site_id | AG5 |
Number of Residues | 6 |
Details | binding site for residue GOL K 404 |
Chain | Residue |
K | SER23 |
K | PRO74 |
K | THR75 |
K | ARG78 |
K | HOH504 |
K | HOH568 |
site_id | AG6 |
Number of Residues | 8 |
Details | binding site for residue EDO K 405 |
Chain | Residue |
K | ARG283 |
K | PRO285 |
K | ASP286 |
K | HOH548 |
K | HOH555 |
K | HOH632 |
K | HOH685 |
N | HOH548 |
site_id | AG7 |
Number of Residues | 3 |
Details | binding site for residue PEG K 406 |
Chain | Residue |
K | LYS84 |
K | ASP112 |
K | GLY113 |
site_id | AG8 |
Number of Residues | 9 |
Details | binding site for residue PUT L 401 |
Chain | Residue |
K | TRP277 |
L | TYR130 |
L | SER158 |
L | TRP159 |
L | ALA183 |
L | GLU187 |
L | HOH529 |
L | HOH576 |
L | HOH597 |
site_id | AG9 |
Number of Residues | 3 |
Details | binding site for residue GOL L 402 |
Chain | Residue |
L | THR75 |
L | ARG78 |
L | HOH505 |
site_id | AH1 |
Number of Residues | 5 |
Details | binding site for residue EDO L 403 |
Chain | Residue |
J | HOH556 |
L | ARG283 |
L | ASP286 |
L | HOH527 |
L | HOH558 |
site_id | AH2 |
Number of Residues | 5 |
Details | binding site for residue EDO L 404 |
Chain | Residue |
B | ARG34 |
L | ASP190 |
L | HOH544 |
L | HOH672 |
L | HOH730 |
site_id | AH3 |
Number of Residues | 1 |
Details | binding site for residue PEG L 405 |
Chain | Residue |
L | HOH615 |
site_id | AH4 |
Number of Residues | 9 |
Details | binding site for residue PUT M 401 |
Chain | Residue |
M | TYR130 |
M | SER158 |
M | ALA183 |
M | GLU187 |
M | HOH520 |
M | HOH531 |
M | HOH551 |
M | HOH554 |
N | TRP277 |
site_id | AH5 |
Number of Residues | 7 |
Details | binding site for residue GOL M 402 |
Chain | Residue |
M | SER23 |
M | PRO74 |
M | THR75 |
M | ARG78 |
M | HOH515 |
M | HOH532 |
M | HOH552 |
site_id | AH6 |
Number of Residues | 7 |
Details | binding site for residue EDO M 403 |
Chain | Residue |
M | ARG283 |
M | ASP286 |
M | HOH548 |
M | HOH636 |
M | HOH644 |
M | HOH651 |
P | HOH509 |
site_id | AH7 |
Number of Residues | 7 |
Details | binding site for residue GOL N 401 |
Chain | Residue |
M | SER195 |
M | HIS198 |
N | MET273 |
N | TRP277 |
N | HOH519 |
N | HOH530 |
N | HOH639 |
site_id | AH8 |
Number of Residues | 9 |
Details | binding site for residue PUT N 402 |
Chain | Residue |
M | TRP277 |
M | HOH559 |
N | TYR130 |
N | SER158 |
N | ALA183 |
N | GLU187 |
N | HOH504 |
N | HOH533 |
N | HOH571 |
site_id | AH9 |
Number of Residues | 5 |
Details | binding site for residue GOL N 403 |
Chain | Residue |
M | MET273 |
M | TRP277 |
N | HIS198 |
N | HOH514 |
N | HOH540 |
site_id | AI1 |
Number of Residues | 6 |
Details | binding site for residue GOL N 404 |
Chain | Residue |
N | SER23 |
N | THR75 |
N | ARG78 |
N | HOH536 |
N | HOH554 |
N | HOH575 |
site_id | AI2 |
Number of Residues | 4 |
Details | binding site for residue GOL N 405 |
Chain | Residue |
N | LYS84 |
N | ASP112 |
N | GLY113 |
N | HOH653 |
site_id | AI3 |
Number of Residues | 5 |
Details | binding site for residue EDO N 406 |
Chain | Residue |
K | HOH529 |
N | PRO285 |
N | ASP286 |
N | HOH525 |
N | HOH613 |
site_id | AI4 |
Number of Residues | 9 |
Details | binding site for residue PUT O 401 |
Chain | Residue |
O | TYR130 |
O | SER158 |
O | ALA183 |
O | GLU187 |
O | HOH523 |
O | HOH550 |
O | HOH569 |
O | HOH598 |
P | TRP277 |
site_id | AI5 |
Number of Residues | 7 |
Details | binding site for residue GOL O 402 |
Chain | Residue |
O | SER195 |
O | HIS198 |
O | HOH555 |
O | HOH570 |
P | LEU211 |
P | MET273 |
P | TRP277 |
site_id | AI6 |
Number of Residues | 4 |
Details | binding site for residue GOL P 401 |
Chain | Residue |
P | VAL22 |
P | PRO74 |
P | THR75 |
P | ARG78 |
site_id | AI7 |
Number of Residues | 4 |
Details | binding site for residue EDO P 402 |
Chain | Residue |
P | ASN100 |
P | HIS102 |
P | LYS133 |
P | ASN137 |
site_id | AI8 |
Number of Residues | 6 |
Details | binding site for residue EDO P 403 |
Chain | Residue |
M | HOH636 |
N | PRO138 |
P | PRO285 |
P | ASP286 |
P | HOH520 |
P | HOH568 |