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5H8I

Crystal structure of Medicago truncatula N-carbamoylputrescine amidohydrolase (MtCPA) in complex with N-(dihydroxymethyl)putrescine

Functional Information from GO Data
ChainGOidnamespacecontents
A0006596biological_processpolyamine biosynthetic process
A0016787molecular_functionhydrolase activity
A0016810molecular_functionhydrolase activity, acting on carbon-nitrogen (but not peptide) bonds
A0033388biological_processputrescine biosynthetic process from arginine
A0050126molecular_functionN-carbamoylputrescine amidase activity
B0006596biological_processpolyamine biosynthetic process
B0016787molecular_functionhydrolase activity
B0016810molecular_functionhydrolase activity, acting on carbon-nitrogen (but not peptide) bonds
B0033388biological_processputrescine biosynthetic process from arginine
B0050126molecular_functionN-carbamoylputrescine amidase activity
C0006596biological_processpolyamine biosynthetic process
C0016787molecular_functionhydrolase activity
C0016810molecular_functionhydrolase activity, acting on carbon-nitrogen (but not peptide) bonds
C0033388biological_processputrescine biosynthetic process from arginine
C0050126molecular_functionN-carbamoylputrescine amidase activity
D0006596biological_processpolyamine biosynthetic process
D0016787molecular_functionhydrolase activity
D0016810molecular_functionhydrolase activity, acting on carbon-nitrogen (but not peptide) bonds
D0033388biological_processputrescine biosynthetic process from arginine
D0050126molecular_functionN-carbamoylputrescine amidase activity
E0006596biological_processpolyamine biosynthetic process
E0016787molecular_functionhydrolase activity
E0016810molecular_functionhydrolase activity, acting on carbon-nitrogen (but not peptide) bonds
E0033388biological_processputrescine biosynthetic process from arginine
E0050126molecular_functionN-carbamoylputrescine amidase activity
F0006596biological_processpolyamine biosynthetic process
F0016787molecular_functionhydrolase activity
F0016810molecular_functionhydrolase activity, acting on carbon-nitrogen (but not peptide) bonds
F0033388biological_processputrescine biosynthetic process from arginine
F0050126molecular_functionN-carbamoylputrescine amidase activity
G0006596biological_processpolyamine biosynthetic process
G0016787molecular_functionhydrolase activity
G0016810molecular_functionhydrolase activity, acting on carbon-nitrogen (but not peptide) bonds
G0033388biological_processputrescine biosynthetic process from arginine
G0050126molecular_functionN-carbamoylputrescine amidase activity
H0006596biological_processpolyamine biosynthetic process
H0016787molecular_functionhydrolase activity
H0016810molecular_functionhydrolase activity, acting on carbon-nitrogen (but not peptide) bonds
H0033388biological_processputrescine biosynthetic process from arginine
H0050126molecular_functionN-carbamoylputrescine amidase activity
I0006596biological_processpolyamine biosynthetic process
I0016787molecular_functionhydrolase activity
I0016810molecular_functionhydrolase activity, acting on carbon-nitrogen (but not peptide) bonds
I0033388biological_processputrescine biosynthetic process from arginine
I0050126molecular_functionN-carbamoylputrescine amidase activity
J0006596biological_processpolyamine biosynthetic process
J0016787molecular_functionhydrolase activity
J0016810molecular_functionhydrolase activity, acting on carbon-nitrogen (but not peptide) bonds
J0033388biological_processputrescine biosynthetic process from arginine
J0050126molecular_functionN-carbamoylputrescine amidase activity
K0006596biological_processpolyamine biosynthetic process
K0016787molecular_functionhydrolase activity
K0016810molecular_functionhydrolase activity, acting on carbon-nitrogen (but not peptide) bonds
K0033388biological_processputrescine biosynthetic process from arginine
K0050126molecular_functionN-carbamoylputrescine amidase activity
L0006596biological_processpolyamine biosynthetic process
L0016787molecular_functionhydrolase activity
L0016810molecular_functionhydrolase activity, acting on carbon-nitrogen (but not peptide) bonds
L0033388biological_processputrescine biosynthetic process from arginine
L0050126molecular_functionN-carbamoylputrescine amidase activity
M0006596biological_processpolyamine biosynthetic process
M0016787molecular_functionhydrolase activity
M0016810molecular_functionhydrolase activity, acting on carbon-nitrogen (but not peptide) bonds
M0033388biological_processputrescine biosynthetic process from arginine
M0050126molecular_functionN-carbamoylputrescine amidase activity
N0006596biological_processpolyamine biosynthetic process
N0016787molecular_functionhydrolase activity
N0016810molecular_functionhydrolase activity, acting on carbon-nitrogen (but not peptide) bonds
N0033388biological_processputrescine biosynthetic process from arginine
N0050126molecular_functionN-carbamoylputrescine amidase activity
O0006596biological_processpolyamine biosynthetic process
O0016787molecular_functionhydrolase activity
O0016810molecular_functionhydrolase activity, acting on carbon-nitrogen (but not peptide) bonds
O0033388biological_processputrescine biosynthetic process from arginine
O0050126molecular_functionN-carbamoylputrescine amidase activity
P0006596biological_processpolyamine biosynthetic process
P0016787molecular_functionhydrolase activity
P0016810molecular_functionhydrolase activity, acting on carbon-nitrogen (but not peptide) bonds
P0033388biological_processputrescine biosynthetic process from arginine
P0050126molecular_functionN-carbamoylputrescine amidase activity
Functional Information from PDB Data
site_idAC1
Number of Residues4
Detailsbinding site for residue GOL A 401
ChainResidue
ASER23
ATHR75
AARG78
AHOH514

site_idAC2
Number of Residues1
Detailsbinding site for residue GOL A 402
ChainResidue
AHOH560

site_idAC3
Number of Residues5
Detailsbinding site for residue GOL A 403
ChainResidue
AHOH509
ATYR54
AALA183
AILE184
AGLY185

site_idAC4
Number of Residues2
Detailsbinding site for residue PEG A 404
ChainResidue
AASP112
AGLY113

site_idAC5
Number of Residues10
Detailsbinding site for residue PGE A 405
ChainResidue
AASP295
ALYS297
AHOH588
AHOH662
AHOH667
AHOH676
BLEU172
BGLN173
BGLY174
BARG274

site_idAC6
Number of Residues5
Detailsbinding site for residue EDO A 406
ChainResidue
AARG283
AASP286
AHOH557
AHOH575
AHOH646

site_idAC7
Number of Residues7
Detailsbinding site for residue GOL B 402
ChainResidue
AMET273
ATRP277
AHOH637
BSER195
BHIS198
BHOH504
BHOH517

site_idAC8
Number of Residues4
Detailsbinding site for residue GOL B 403
ChainResidue
BGLU51
BARG66
BHOH518
BHOH554

site_idAC9
Number of Residues6
Detailsbinding site for residue GOL C 402
ChainResidue
CHIS198
CHOH506
CHOH553
CHOH592
DMET273
DTRP277

site_idAD1
Number of Residues7
Detailsbinding site for residue GOL C 403
ChainResidue
CVAL22
CSER23
CPRO74
CTHR75
CARG78
CHOH515
CHOH523

site_idAD2
Number of Residues5
Detailsbinding site for residue GOL C 404
ChainResidue
CARG66
CHOH505
CHOH525
CHOH548
CHOH611

site_idAD3
Number of Residues5
Detailsbinding site for residue GOL C 405
ChainResidue
CARG201
CHOH608
DGLN204
DGLU248
DILE249

site_idAD4
Number of Residues5
Detailsbinding site for residue PGE C 406
ChainResidue
CLYS84
CASP112
CGLY113
CHOH510
CHOH773

site_idAD5
Number of Residues6
Detailsbinding site for residue EDO C 407
ChainResidue
CARG283
CPRO285
CASP286
CHOH632
CHOH674
DHOH539

site_idAD6
Number of Residues9
Detailsbinding site for residue GOL D 402
ChainResidue
CMET273
CTRP277
DILE193
DSER195
DHIS198
DHOH543
DHOH587
DHOH621
DHOH717

site_idAD7
Number of Residues7
Detailsbinding site for residue GOL D 403
ChainResidue
DSER23
DPRO74
DTHR75
DARG78
DHOH505
DHOH544
DHOH569

site_idAD8
Number of Residues5
Detailsbinding site for residue PEG D 404
ChainResidue
DLYS81
DASP112
DGLY113
DHOH571
DHOH620

site_idAD9
Number of Residues8
Detailsbinding site for residue PEG D 405
ChainResidue
OARG31
OHOH702
DLYS256
DGLU257
DGLU258
DHOH679
DHOH686
DHOH709

site_idAE1
Number of Residues8
Detailsbinding site for residue EDO D 406
ChainResidue
AHOH575
AHOH599
CVAL300
DARG283
DPRO285
DASP286
DHOH586
DHOH716

site_idAE2
Number of Residues8
Detailsbinding site for residue GOL E 402
ChainResidue
ESER195
EHIS198
EHOH505
EHOH508
EHOH519
EHOH717
FMET273
FTRP277

site_idAE3
Number of Residues5
Detailsbinding site for residue GOL E 403
ChainResidue
EMET273
ETRP277
EHOH538
EHOH565
FHIS198

site_idAE4
Number of Residues7
Detailsbinding site for residue GOL E 404
ChainResidue
EVAL22
ESER23
EPRO74
ETHR75
EARG78
EHOH515
EHOH569

site_idAE5
Number of Residues2
Detailsbinding site for residue GOL E 405
ChainResidue
EASP112
EGLY113

site_idAE6
Number of Residues6
Detailsbinding site for residue GOL F 402
ChainResidue
FVAL22
FSER23
FTHR75
FARG78
FHOH501
FHOH505

site_idAE7
Number of Residues8
Detailsbinding site for residue GOL F 403
ChainResidue
CARG284
DPRO138
DGLY139
ELEU294
FPRO285
FASP286
FHOH568
FHOH709

site_idAE8
Number of Residues7
Detailsbinding site for residue GOL G 402
ChainResidue
GGLU257
GHOH596
GHOH599
GHOH601
GHOH652
LLEU32
LGLU258

site_idAE9
Number of Residues2
Detailsbinding site for residue PEG G 403
ChainResidue
GGLU30
GARG78

site_idAF1
Number of Residues2
Detailsbinding site for residue PGE G 404
ChainResidue
GGLN147
GLYS152

site_idAF2
Number of Residues4
Detailsbinding site for residue GOL H 401
ChainResidue
GHIS198
HMET273
HTRP277
HHOH530

site_idAF3
Number of Residues5
Detailsbinding site for residue GOL I 401
ChainResidue
ISER23
ITHR75
IARG78
IHOH515
IHOH557

site_idAF4
Number of Residues10
Detailsbinding site for residue GOL I 402
ChainResidue
IARG283
IPRO285
IASP286
IHOH524
IHOH601
IHOH666
JLEU294
KPRO138
KGLY139
LARG284

site_idAF5
Number of Residues5
Detailsbinding site for residue GOL J 402
ChainResidue
IMET273
ITRP277
JHIS198
JHOH506
JHOH510

site_idAF6
Number of Residues6
Detailsbinding site for residue GOL J 403
ChainResidue
JSER23
JPRO74
JTHR75
JARG78
JHOH503
JHOH529

site_idAF7
Number of Residues5
Detailsbinding site for residue GOL J 404
ChainResidue
JGLU51
JPHE55
JARG66
JHOH502
JHOH556

site_idAF8
Number of Residues11
Detailsbinding site for residue GOL J 405
ChainResidue
IARG284
IHOH563
JPRO138
JGLY139
JHOH560
JHOH658
KLEU294
LARG283
LPRO285
LASP286
LHOH561

site_idAF9
Number of Residues2
Detailsbinding site for residue PEG J 406
ChainResidue
JILE249
JHOH715

site_idAG1
Number of Residues5
Detailsbinding site for residue PGE J 407
ChainResidue
IASP295
JLEU172
JGLY174
JARG274
JPHE280

site_idAG2
Number of Residues7
Detailsbinding site for residue GOL K 402
ChainResidue
KHIS198
KHOH509
KHOH511
KHOH559
KHOH577
LMET273
LTRP277

site_idAG3
Number of Residues6
Detailsbinding site for residue GOL K 403
ChainResidue
KMET273
KTRP277
KHOH521
KHOH542
KHOH773
LHIS198

site_idAG4
Number of Residues7
Detailsbinding site for residue GOL K 404
ChainResidue
KSER23
KPRO74
KTHR75
KARG78
KHOH501
KHOH531
KHOH619

site_idAG5
Number of Residues8
Detailsbinding site for residue EDO K 405
ChainResidue
KARG283
KPRO285
KASP286
KHOH615
KHOH638
MHOH608
NHOH540
NHOH681

site_idAG6
Number of Residues7
Detailsbinding site for residue GOL L 402
ChainResidue
LSER23
LPRO74
LTHR75
LARG78
LHOH502
LHOH506
LHOH546

site_idAG7
Number of Residues4
Detailsbinding site for residue PEG L 403
ChainResidue
LASP112
LGLY113
LHOH567
LHOH569

site_idAG8
Number of Residues6
Detailsbinding site for residue NA L 404
ChainResidue
GHOH596
GHOH711
LVAL260
LHOH592
LHOH593
LHOH765

site_idAG9
Number of Residues7
Detailsbinding site for residue GOL M 402
ChainResidue
MSER195
MHIS198
MHOH507
MHOH564
MHOH770
NMET273
NTRP277

site_idAH1
Number of Residues8
Detailsbinding site for residue GOL M 403
ChainResidue
MVAL22
MSER23
MTHR75
MARG78
MHOH509
MHOH511
MHOH526
MHOH742

site_idAH2
Number of Residues8
Detailsbinding site for residue GOL N 402
ChainResidue
MMET273
MTRP277
NSER195
NHIS198
NHOH501
NHOH503
NHOH510
NHOH689

site_idAH3
Number of Residues5
Detailsbinding site for residue GOL N 403
ChainResidue
NSER23
NTHR75
NARG78
NHOH502
NHOH542

site_idAH4
Number of Residues5
Detailsbinding site for residue GOL N 404
ChainResidue
NLYS81
NLYS84
NASP112
NGLY113
NHOH598

site_idAH5
Number of Residues7
Detailsbinding site for residue EDO N 405
ChainResidue
KHOH565
NARG283
NPRO285
NASP286
NHOH530
NHOH681
NHOH738

site_idAH6
Number of Residues7
Detailsbinding site for residue GOL O 402
ChainResidue
OSER195
OHIS198
OHOH513
OHOH534
OHOH551
PMET273
PTRP277

site_idAH7
Number of Residues5
Detailsbinding site for residue EDO P 401
ChainResidue
PARG283
PPRO285
PASP286
PHOH524
PHOH539

site_idAH8
Number of Residues17
Detailsbinding site for Di-peptide N2H B 401 and CYS B 158
ChainResidue
ATRP277
BGLU48
BTYR54
BLYS121
BPRO125
BTYR130
BGLU132
BILE157
BTRP159
BASP160
BGLN161
BPRO181
BALA183
BGLU187
BHOH555
BHOH569
BHOH603

site_idAH9
Number of Residues17
Detailsbinding site for Di-peptide N2H C 401 and CYS C 158
ChainResidue
CGLU48
CTYR54
CLYS121
CPRO125
CTYR130
CGLU132
CILE157
CTRP159
CASP160
CGLN161
CPRO181
CALA183
CGLU187
CHOH533
CHOH597
DTRP277
DHOH609

site_idAI1
Number of Residues15
Detailsbinding site for Di-peptide N2H D 401 and CYS D 158
ChainResidue
CTRP277
DGLU48
DTYR54
DLYS121
DPRO125
DGLU132
DILE157
DTRP159
DASP160
DGLN161
DPRO181
DALA183
DGLU187
DHOH607
DHOH623

site_idAI2
Number of Residues16
Detailsbinding site for Di-peptide N2H E 401 and CYS E 158
ChainResidue
EGLU48
ETYR54
ELYS121
EPRO125
EGLU132
EILE157
ETRP159
EASP160
EGLN161
EPRO181
EALA183
EGLU187
EHOH528
EHOH554
FTRP277
FHOH553

site_idAI3
Number of Residues17
Detailsbinding site for Di-peptide N2H F 401 and CYS F 158
ChainResidue
ETRP277
FGLU48
FTYR54
FLYS121
FPRO125
FTYR130
FGLU132
FILE157
FTRP159
FASP160
FGLN161
FPRO181
FALA183
FGLU187
FHOH508
FHOH586
FHOH601

site_idAI4
Number of Residues16
Detailsbinding site for Di-peptide N2H G 401 and CYS G 158
ChainResidue
GGLU48
GTYR54
GLYS121
GPRO125
GGLU132
GILE157
GTRP159
GASP160
GGLN161
GPRO181
GALA183
GGLU187
GHOH514
GHOH567
HTRP277
HHOH532

site_idAI5
Number of Residues16
Detailsbinding site for Di-peptide N2H J 401 and CYS J 158
ChainResidue
ITRP277
IHOH549
JGLU48
JTYR54
JLYS121
JPRO125
JGLU132
JILE157
JTRP159
JASP160
JGLN161
JPRO181
JALA183
JGLU187
JHOH550
JHOH566

site_idAI6
Number of Residues17
Detailsbinding site for Di-peptide N2H K 401 and CYS K 158
ChainResidue
KGLU48
KTYR54
KLYS121
KPRO125
KTYR130
KGLU132
KILE157
KTRP159
KASP160
KGLN161
KPRO181
KALA183
KGLU187
KHOH572
KHOH621
KHOH627
LTRP277

site_idAI7
Number of Residues15
Detailsbinding site for Di-peptide N2H L 401 and CYS L 158
ChainResidue
KTRP277
KHOH639
LGLU48
LTYR54
LLYS121
LPRO125
LGLU132
LILE157
LTRP159
LASP160
LGLN161
LPRO181
LALA183
LGLU187
LHOH587

site_idAI8
Number of Residues16
Detailsbinding site for Di-peptide N2H M 401 and CYS M 158
ChainResidue
MGLU48
MTYR54
MLYS121
MPRO125
MTYR130
MGLU132
MILE157
MTRP159
MASP160
MGLN161
MPRO181
MALA183
MGLU187
MHOH537
NTRP277
NHOH601

site_idAI9
Number of Residues16
Detailsbinding site for Di-peptide N2H N 401 and CYS N 158
ChainResidue
MTRP277
MHOH576
NGLU48
NTYR54
NLYS121
NPRO125
NGLU132
NILE157
NTRP159
NASP160
NGLN161
NPRO181
NALA183
NGLU187
NHOH545
NHOH563

site_idAJ1
Number of Residues16
Detailsbinding site for Di-peptide N2H O 401 and CYS O 158
ChainResidue
OGLU48
OTYR54
OLYS121
OPRO125
OGLU132
OILE157
OTRP159
OASP160
OGLN161
OPRO181
OALA183
OGLU187
OHOH526
OHOH542
OHOH625
PTRP277

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PDB entries from 2024-07-10

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