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5H2G

Crystal structure of oxidized DapF from Corynebacterium glutamicum

Functional Information from GO Data
ChainGOidnamespacecontents
A0005737cellular_componentcytoplasm
A0005829cellular_componentcytosol
A0008837molecular_functiondiaminopimelate epimerase activity
A0009085biological_processlysine biosynthetic process
A0009089biological_processlysine biosynthetic process via diaminopimelate
A0016853molecular_functionisomerase activity
B0005737cellular_componentcytoplasm
B0005829cellular_componentcytosol
B0008837molecular_functiondiaminopimelate epimerase activity
B0009085biological_processlysine biosynthetic process
B0009089biological_processlysine biosynthetic process via diaminopimelate
B0016853molecular_functionisomerase activity
Functional Information from PDB Data
site_idAC1
Number of Residues6
Detailsbinding site for residue GOL A 301
ChainResidue
AARG40
AASP47
AGLU217
ATHR218
AARG219
BARG41

site_idAC2
Number of Residues6
Detailsbinding site for residue SO4 A 302
ChainResidue
AHOH552
BARG40
BARG41
AARG40
AARG41
AHOH542

Functional Information from PROSITE/UniProt
site_idPS01326
Number of Residues15
DetailsDAP_EPIMERASE Diaminopimelate epimerase signature. NaDGSlaemCGNGvR
ChainResidueDetails
AASN74-ARG88

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues2
DetailsACT_SITE: Proton donor => ECO:0000305|Ref.4, ECO:0007744|PDB:5M47
ChainResidueDetails
ACYS83
BCYS83

site_idSWS_FT_FI2
Number of Residues2
DetailsACT_SITE: Proton acceptor => ECO:0000255|HAMAP-Rule:MF_00197
ChainResidueDetails
ACYS221
BCYS221

site_idSWS_FT_FI3
Number of Residues12
DetailsBINDING: BINDING => ECO:0000269|Ref.4, ECO:0007744|PDB:5M47
ChainResidueDetails
AASN15
BASN194
BGLU212
BGLY222
AGLY84
AASN159
AASN194
AGLU212
AGLY222
BASN15
BGLY84
BASN159

site_idSWS_FT_FI4
Number of Residues2
DetailsBINDING: BINDING => ECO:0000255|HAMAP-Rule:MF_00197
ChainResidueDetails
AASN74
BASN74

site_idSWS_FT_FI5
Number of Residues4
DetailsSITE: Could be important to modulate the pK values of the two catalytic cysteine residues => ECO:0000255|HAMAP-Rule:MF_00197
ChainResidueDetails
AHIS161
AGLU212
BHIS161
BGLU212

219140

PDB entries from 2024-05-01

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