5GZ5
Crystal structure of snake venom phosphodiesterase (PDE) from Taiwan cobra (Naja atra atra) in complex with AMP
Functional Information from GO Data
Chain | GOid | namespace | contents |
A | 0003676 | molecular_function | nucleic acid binding |
A | 0005576 | cellular_component | extracellular region |
A | 0009143 | biological_process | nucleoside triphosphate catabolic process |
A | 0016787 | molecular_function | hydrolase activity |
A | 0035821 | biological_process | modulation of process of another organism |
A | 0043262 | molecular_function | ADP phosphatase activity |
A | 0046872 | molecular_function | metal ion binding |
A | 0047429 | molecular_function | nucleoside triphosphate diphosphatase activity |
A | 0090729 | molecular_function | toxin activity |
Functional Information from PROSITE/UniProt
site_id | PS00524 |
Number of Residues | 21 |
Details | SMB_1 Somatomedin B domain (SMB) signature. CsCdnkCterka.CCwDYqdiC |
Chain | Residue | Details |
A | CYS49-CYS69 | |
A | CYS93-CYS113 |
Functional Information from SwissProt/UniProt
site_id | SWS_FT_FI1 |
Number of Residues | 1 |
Details | ACT_SITE: AMP-threonine intermediate => ECO:0000269|Ref.1, ECO:0007744|PDB:5GZ5 |
Chain | Residue | Details |
A | THR185 |
site_id | SWS_FT_FI2 |
Number of Residues | 6 |
Details | BINDING: BINDING => ECO:0000269|Ref.1, ECO:0007744|PDB:5GZ4, ECO:0007744|PDB:5GZ5 |
Chain | Residue | Details |
A | ASP147 | |
A | THR185 | |
A | ASP305 | |
A | ASP352 | |
A | HIS353 | |
A | HIS462 |
site_id | SWS_FT_FI3 |
Number of Residues | 2 |
Details | BINDING: BINDING => ECO:0000269|Ref.1, ECO:0007744|PDB:5GZ5 |
Chain | Residue | Details |
A | LYS271 | |
A | HIS309 |
site_id | SWS_FT_FI4 |
Number of Residues | 1 |
Details | CARBOHYD: N-linked (GlcNAc...) asparagine => ECO:0000269|Ref.1, ECO:0007744|PDB:5GZ4 |
Chain | Residue | Details |
A | ASN39 |
site_id | SWS_FT_FI5 |
Number of Residues | 5 |
Details | CARBOHYD: N-linked (GlcNAc...) asparagine => ECO:0000269|Ref.1, ECO:0007744|PDB:5GZ4, ECO:0007744|PDB:5GZ5 |
Chain | Residue | Details |
A | ASN216 | |
A | ASN259 | |
A | ASN270 | |
A | ASN512 | |
A | ASN746 |
site_id | SWS_FT_FI6 |
Number of Residues | 1 |
Details | CARBOHYD: N-linked (GlcNAc...) asparagine => ECO:0000269|Ref.1, ECO:0007744|PDB:5GZ5 |
Chain | Residue | Details |
A | ASN765 |