5GUW
Complex of Cytochrome cd1 Nitrite Reductase and Nitric Oxide Reductase in Denitrification of Pseudomonas aeruginosa
Functional Information from GO Data
Chain | GOid | namespace | contents |
A | 0005886 | cellular_component | plasma membrane |
A | 0009055 | molecular_function | electron transfer activity |
A | 0020037 | molecular_function | heme binding |
A | 0046872 | molecular_function | metal ion binding |
B | 0004129 | molecular_function | cytochrome-c oxidase activity |
B | 0005886 | cellular_component | plasma membrane |
B | 0009060 | biological_process | aerobic respiration |
B | 0015990 | biological_process | electron transport coupled proton transport |
B | 0016020 | cellular_component | membrane |
B | 0016491 | molecular_function | oxidoreductase activity |
B | 0016966 | molecular_function | nitric oxide reductase activity |
B | 0019333 | biological_process | denitrification pathway |
B | 0020037 | molecular_function | heme binding |
B | 0022904 | biological_process | respiratory electron transport chain |
B | 0046872 | molecular_function | metal ion binding |
C | 0005886 | cellular_component | plasma membrane |
C | 0009055 | molecular_function | electron transfer activity |
C | 0020037 | molecular_function | heme binding |
C | 0046872 | molecular_function | metal ion binding |
D | 0004129 | molecular_function | cytochrome-c oxidase activity |
D | 0005886 | cellular_component | plasma membrane |
D | 0009060 | biological_process | aerobic respiration |
D | 0015990 | biological_process | electron transport coupled proton transport |
D | 0016020 | cellular_component | membrane |
D | 0016491 | molecular_function | oxidoreductase activity |
D | 0016966 | molecular_function | nitric oxide reductase activity |
D | 0019333 | biological_process | denitrification pathway |
D | 0020037 | molecular_function | heme binding |
D | 0022904 | biological_process | respiratory electron transport chain |
D | 0046872 | molecular_function | metal ion binding |
M | 0009055 | molecular_function | electron transfer activity |
M | 0020037 | molecular_function | heme binding |
N | 0009055 | molecular_function | electron transfer activity |
N | 0020037 | molecular_function | heme binding |
Functional Information from PDB Data
site_id | AC1 |
Number of Residues | 19 |
Details | binding site for residue HEC A 201 |
Chain | Residue |
A | ASN59 |
A | LEU95 |
A | TRP98 |
A | ARG109 |
A | ARG110 |
A | ALA111 |
A | MET112 |
A | PRO113 |
A | PHE115 |
A | LEU125 |
B | MET427 |
A | CYS61 |
A | CYS64 |
A | HIS65 |
A | ALA75 |
A | LEU78 |
A | VAL81 |
A | ARG84 |
A | ARG85 |
site_id | AC2 |
Number of Residues | 6 |
Details | binding site for residue CA A 202 |
Chain | Residue |
A | GLY71 |
A | TYR73 |
B | ARG57 |
B | GLU135 |
B | HEM801 |
B | HEM802 |
site_id | AC3 |
Number of Residues | 7 |
Details | binding site for residue 10M A 203 |
Chain | Residue |
A | ASN138 |
A | GLN139 |
A | PRO142 |
B | LEU270 |
B | TRP271 |
B | TYR336 |
B | TYR337 |
site_id | AC4 |
Number of Residues | 22 |
Details | binding site for residue HEM B 801 |
Chain | Residue |
A | ALA72 |
A | TYR73 |
A | PHE74 |
A | CA202 |
B | GLN30 |
B | ILE31 |
B | GLY34 |
B | LEU35 |
B | MET37 |
B | TYR41 |
B | PHE53 |
B | ARG57 |
B | HIS60 |
B | LEU64 |
B | GLU135 |
B | HIS349 |
B | PHE352 |
B | TYR353 |
B | MET397 |
B | GLU441 |
B | PHE447 |
B | HEM802 |
site_id | AC5 |
Number of Residues | 24 |
Details | binding site for residue HEM B 802 |
Chain | Residue |
A | TYR73 |
A | CA202 |
B | GLU135 |
B | VAL210 |
B | GLU211 |
B | HIS258 |
B | HIS259 |
B | SER277 |
B | GLU280 |
B | ALA322 |
B | GLY326 |
B | PHE327 |
B | HIS329 |
B | THR330 |
B | ASN335 |
B | HIS339 |
B | THR344 |
B | HIS347 |
B | ALA351 |
B | PHE352 |
B | ALA355 |
B | TYR356 |
B | HEM801 |
B | O804 |
site_id | AC6 |
Number of Residues | 5 |
Details | binding site for residue FE B 803 |
Chain | Residue |
B | HIS207 |
B | GLU211 |
B | HIS258 |
B | HIS259 |
B | O804 |
site_id | AC7 |
Number of Residues | 4 |
Details | binding site for residue O B 804 |
Chain | Residue |
B | GLU211 |
B | HIS259 |
B | HEM802 |
B | FE803 |
site_id | AC8 |
Number of Residues | 19 |
Details | binding site for residue HEC C 201 |
Chain | Residue |
C | ALA111 |
C | MET112 |
C | PHE115 |
C | LEU125 |
D | PHE53 |
D | ASN54 |
D | MET427 |
C | CYS61 |
C | CYS64 |
C | HIS65 |
C | ALA75 |
C | LEU78 |
C | VAL81 |
C | ARG84 |
C | ARG85 |
C | LEU95 |
C | TRP98 |
C | ARG109 |
C | ARG110 |
site_id | AC9 |
Number of Residues | 5 |
Details | binding site for residue CA C 202 |
Chain | Residue |
C | GLY71 |
C | TYR73 |
D | GLU135 |
D | HEM801 |
D | HEM802 |
site_id | AD1 |
Number of Residues | 9 |
Details | binding site for residue 10M C 203 |
Chain | Residue |
C | ASN138 |
C | GLN139 |
C | PRO142 |
C | HOH301 |
D | LEU270 |
D | TRP271 |
D | TYR336 |
D | TYR337 |
D | 10M805 |
site_id | AD2 |
Number of Residues | 21 |
Details | binding site for residue HEM D 801 |
Chain | Residue |
C | ALA72 |
C | TYR73 |
C | PHE74 |
C | CA202 |
D | GLN30 |
D | ILE31 |
D | GLY34 |
D | LEU35 |
D | MET37 |
D | TYR41 |
D | PHE53 |
D | ARG57 |
D | HIS60 |
D | LEU64 |
D | GLU135 |
D | HIS349 |
D | PHE352 |
D | TYR353 |
D | MET397 |
D | PHE447 |
D | HEM802 |
site_id | AD3 |
Number of Residues | 26 |
Details | binding site for residue HEM D 802 |
Chain | Residue |
C | CA202 |
D | GLU135 |
D | PHE136 |
D | TRP203 |
D | VAL210 |
D | GLU211 |
D | HIS258 |
D | HIS259 |
D | GLU280 |
D | PHE284 |
D | ALA322 |
D | GLY326 |
D | PHE327 |
D | HIS329 |
D | THR330 |
D | ASN335 |
D | HIS339 |
D | GLY340 |
D | THR344 |
D | HIS347 |
D | ALA351 |
D | PHE352 |
D | ALA355 |
D | TYR356 |
D | HEM801 |
D | O804 |
site_id | AD4 |
Number of Residues | 5 |
Details | binding site for residue FE D 803 |
Chain | Residue |
D | HIS207 |
D | GLU211 |
D | HIS258 |
D | HIS259 |
D | O804 |
site_id | AD5 |
Number of Residues | 4 |
Details | binding site for residue O D 804 |
Chain | Residue |
D | GLU211 |
D | HIS259 |
D | HEM802 |
D | FE803 |
site_id | AD6 |
Number of Residues | 4 |
Details | binding site for residue 10M D 805 |
Chain | Residue |
C | 10M203 |
D | MET328 |
D | MET417 |
D | ALA419 |
site_id | AD7 |
Number of Residues | 20 |
Details | binding site for residue DHE M 602 |
Chain | Residue |
M | ARG156 |
M | HIS182 |
M | ILE183 |
M | ARG185 |
M | ARG198 |
M | ARG225 |
M | SER226 |
M | TYR245 |
M | ALA283 |
M | ALA284 |
M | ILE285 |
M | HIS327 |
M | ARG372 |
M | PHE425 |
M | GLN483 |
M | TRP498 |
M | GLY531 |
M | PHE533 |
N | TYR10 |
N | ALA13 |
site_id | AD8 |
Number of Residues | 3 |
Details | binding site for residue CL M 603 |
Chain | Residue |
M | GLY268 |
M | MET269 |
N | SER265 |
site_id | AD9 |
Number of Residues | 19 |
Details | binding site for residue DHE N 602 |
Chain | Residue |
M | TYR10 |
M | ALA13 |
N | ARG156 |
N | HIS182 |
N | ILE183 |
N | ARG185 |
N | ARG198 |
N | ARG225 |
N | SER226 |
N | TYR245 |
N | ALA283 |
N | ALA284 |
N | ILE285 |
N | HIS327 |
N | ARG372 |
N | PHE425 |
N | GLN483 |
N | GLY531 |
N | PHE533 |
site_id | AE1 |
Number of Residues | 3 |
Details | binding site for residue CL N 603 |
Chain | Residue |
M | SER265 |
N | GLY268 |
N | MET269 |
site_id | AE2 |
Number of Residues | 21 |
Details | binding site for Di-peptide HEC M 601 and CYS M 50 |
Chain | Residue |
M | ARG46 |
M | CYS47 |
M | ALA48 |
M | GLY49 |
M | HIS51 |
M | GLY52 |
M | GLY57 |
M | ALA58 |
M | THR59 |
M | LYS61 |
M | LEU63 |
M | ARG71 |
M | TYR75 |
M | LEU79 |
M | THR84 |
M | LEU86 |
M | GLY87 |
M | MET88 |
M | PRO89 |
M | TRP91 |
M | ILE109 |
site_id | AE3 |
Number of Residues | 19 |
Details | binding site for Di-peptide HEC M 601 and CYS M 47 |
Chain | Residue |
M | TYR43 |
M | ARG46 |
M | ALA48 |
M | GLY49 |
M | CYS50 |
M | HIS51 |
M | THR59 |
M | LYS61 |
M | LEU63 |
M | ARG71 |
M | TYR75 |
M | LEU79 |
M | THR84 |
M | LEU86 |
M | GLY87 |
M | MET88 |
M | PRO89 |
M | TRP91 |
M | ILE109 |
site_id | AE4 |
Number of Residues | 20 |
Details | binding site for Di-peptide HEC N 601 and CYS N 50 |
Chain | Residue |
M | GLU8 |
N | ARG46 |
N | CYS47 |
N | ALA48 |
N | GLY49 |
N | HIS51 |
N | GLY52 |
N | GLY57 |
N | ALA58 |
N | THR59 |
N | LEU63 |
N | ARG71 |
N | TYR75 |
N | LEU79 |
N | THR84 |
N | LEU86 |
N | GLY87 |
N | MET88 |
N | TRP91 |
N | ILE109 |
site_id | AE5 |
Number of Residues | 18 |
Details | binding site for Di-peptide HEC N 601 and CYS N 47 |
Chain | Residue |
M | GLU8 |
N | TYR43 |
N | ARG46 |
N | ALA48 |
N | GLY49 |
N | CYS50 |
N | HIS51 |
N | THR59 |
N | LEU63 |
N | ARG71 |
N | TYR75 |
N | LEU79 |
N | THR84 |
N | LEU86 |
N | GLY87 |
N | MET88 |
N | TRP91 |
N | ILE109 |
Functional Information from PROSITE/UniProt
site_id | PS00077 |
Number of Residues | 57 |
Details | COX1_CUB Heme-copper oxidase catalytic subunit, copper B binding region signature. WWVVHLwVegvwelimgailafvlvkitgvdreviekwlyviiamalisgiigtgHH |
Chain | Residue | Details |
B | TRP203-HIS259 |
Functional Information from SwissProt/UniProt
site_id | SWS_FT_FI1 |
Number of Residues | 4 |
Details | BINDING: covalent => ECO:0000269|PubMed:9331415, ECO:0007744|PDB:1NIR |
Chain | Residue | Details |
M | CYS47 | |
B | HIS349-PRO369 | |
B | TRP391-GLN411 | |
B | ALA434-TYR454 | |
D | TYR19-LEU39 | |
D | THR61-PRO81 | |
D | TRP95-VAL115 | |
D | ILE142-VAL162 | |
D | ALA169-PHE189 | |
D | VAL205-VAL225 | |
D | VAL243-ILE263 | |
M | CYS50 | |
D | LEU270-PHE290 | |
D | ALA308-MET328 | |
D | HIS349-PRO369 | |
D | TRP391-GLN411 | |
D | ALA434-TYR454 | |
N | CYS47 | |
N | CYS50 | |
B | ALA169-PHE189 | |
B | VAL205-VAL225 | |
B | VAL243-ILE263 | |
B | LEU270-PHE290 | |
B | ALA308-MET328 |
site_id | SWS_FT_FI2 |
Number of Residues | 4 |
Details | BINDING: axial binding residue => ECO:0000269|PubMed:9331415, ECO:0007744|PDB:1NIR |
Chain | Residue | Details |
M | HIS51 | |
M | MET88 | |
N | HIS51 | |
N | MET88 | |
D | GLY348 | |
D | MET350 |
site_id | SWS_FT_FI3 |
Number of Residues | 14 |
Details | BINDING: BINDING => ECO:0000269|PubMed:9331415, ECO:0007744|PDB:1NIR |
Chain | Residue | Details |
M | ARG71 | |
N | ARG225 | |
N | SER226 | |
N | TYR245 | |
N | ARG372 | |
N | GLN483 | |
M | THR84 | |
M | ARG225 | |
M | SER226 | |
M | TYR245 | |
M | ARG372 | |
M | GLN483 | |
N | ARG71 | |
N | THR84 |
site_id | SWS_FT_FI4 |
Number of Residues | 2 |
Details | BINDING: proximal binding residue => ECO:0000269|PubMed:9331415, ECO:0007744|PDB:1NIR |
Chain | Residue | Details |
M | HIS182 | |
N | HIS182 |
Catalytic Information from CSA
site_id | MCSA1 |
Number of Residues | 6 |
Details | M-CSA 903 |
Chain | Residue | Details |
M | CYS47 | covalently attached |
M | CYS50 | covalently attached |
M | HIS51 | metal ligand |
M | MET88 | metal ligand |
M | HIS327 | electrostatic stabiliser |
M | HIS369 | electrostatic stabiliser |
site_id | MCSA2 |
Number of Residues | 6 |
Details | M-CSA 903 |
Chain | Residue | Details |
N | CYS47 | covalently attached |
N | CYS50 | covalently attached |
N | HIS51 | metal ligand |
N | MET88 | metal ligand |
N | HIS327 | electrostatic stabiliser |
N | HIS369 | electrostatic stabiliser |