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5GTF

Crystal structure of onion lachrymatory factor synthase (LFS) containing glycerol

Functional Information from GO Data
ChainGOidnamespacecontents
A0005773cellular_componentvacuole
A0016853molecular_functionisomerase activity
B0005773cellular_componentvacuole
B0016853molecular_functionisomerase activity
C0005773cellular_componentvacuole
C0016853molecular_functionisomerase activity
D0005773cellular_componentvacuole
D0016853molecular_functionisomerase activity
Functional Information from PDB Data
site_idAC1
Number of Residues9
Detailsbinding site for residue GOL A 201
ChainResidue
AMET51
ALEU54
AARG71
APHE84
AGLU88
ATYR102
ATYR114
ATRP133
ATRP155

site_idAC2
Number of Residues5
Detailsbinding site for residue GOL A 202
ChainResidue
AHIS48
AVAL56
ACYS57
AGLU58
ASO4203

site_idAC3
Number of Residues3
Detailsbinding site for residue SO4 A 203
ChainResidue
AHIS48
ALYS49
AGOL202

site_idAC4
Number of Residues7
Detailsbinding site for residue GOL B 201
ChainResidue
BMET51
BLEU54
BARG71
BGLU88
BTYR102
BTYR114
BTRP133

site_idAC5
Number of Residues6
Detailsbinding site for residue GOL B 202
ChainResidue
AHOH312
BLEU93
BASP94
BASN95
BLYS96
BHOH361

site_idAC6
Number of Residues7
Detailsbinding site for residue GOL B 203
ChainResidue
BILE140
BGLU141
BGLY142
BMET143
CALA18
CARG19
CTRP21

site_idAC7
Number of Residues5
Detailsbinding site for residue SO4 B 204
ChainResidue
BPRO124
BGLU125
BHOH302
BHOH366
DARG130

site_idAC8
Number of Residues5
Detailsbinding site for residue SO4 B 205
ChainResidue
BARG130
BHOH307
BHOH310
DPRO124
DGLU125

site_idAC9
Number of Residues3
Detailsbinding site for residue SO4 C 201
ChainResidue
AGLU125
CARG130
CHOH313

site_idAD1
Number of Residues8
Detailsbinding site for residue GOL C 202
ChainResidue
CMET51
CLEU54
CARG71
CPHE84
CGLU88
CTYR102
CTYR114
CTRP155

site_idAD2
Number of Residues8
Detailsbinding site for residue GOL C 203
ChainResidue
BILE80
BGLU141
BGLY142
BMET143
CTHR144
CGLU145
CSER146
CHOH302

site_idAD3
Number of Residues4
Detailsbinding site for residue SO4 C 204
ChainResidue
AARG130
CPRO124
CGLU125
CHOH348

site_idAD4
Number of Residues8
Detailsbinding site for residue GOL D 201
ChainResidue
DMET51
DLEU54
DARG71
DPHE84
DGLU88
DTYR102
DTYR114
DTRP155

site_idAD5
Number of Residues7
Detailsbinding site for residue MES D 202
ChainResidue
CSER168
DGLU82
DGLU141
DGLY142
DMET143
DHOH347
DHOH358

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues8
DetailsActive site: {"description":"Proton donor/acceptor","evidences":[{"source":"PubMed","id":"28708375","evidenceCode":"ECO:0000305"}]}
ChainResidueDetails

site_idSWS_FT_FI2
Number of Residues4
DetailsSite: {"description":"Lowers pKa of active site Glu","evidences":[{"source":"PubMed","id":"28708375","evidenceCode":"ECO:0000269"}]}
ChainResidueDetails

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PDB entries from 2025-12-10

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