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5GGA

Crystal structure of Mycobacterium smegmatis MutT1 in complex with 8-oxo-GDP, 8-oxo-GMP and pyrophosphate

Functional Information from GO Data
ChainGOidnamespacecontents
A0006260biological_processDNA replication
A0006281biological_processDNA repair
A0006974biological_processDNA damage response
A0008413molecular_function8-oxo-7,8-dihydroguanosine triphosphate pyrophosphatase activity
A0016787molecular_functionhydrolase activity
A0044715molecular_function8-oxo-dGDP phosphatase activity
A0044716molecular_function8-oxo-GDP phosphatase activity
A0046872molecular_functionmetal ion binding
Functional Information from PDB Data
site_idAC1
Number of Residues15
Detailsbinding site for residue G8D A 401
ChainResidue
AARG55
AASP148
AHOH512
AHOH528
AHOH532
AHOH566
AHOH586
AARG57
ATYR58
AASP60
ASER62
ALYS65
ATYR101
ALYS108
ATYR145

site_idAC2
Number of Residues10
Detailsbinding site for residue 8GM A 402
ChainResidue
AASP59
ATRP61
AASP141
AGLN142
AGLN144
AHOH506
AHOH508
AHOH530
AHOH556
AHOH582

site_idAC3
Number of Residues12
Detailsbinding site for residue POP A 403
ChainResidue
AARG169
AHIS170
AARG176
AARG186
AARG218
AGLN271
AGLY272
ALYS297
AHOH515
AHOH522
AHOH539
AHOH551

site_idAC4
Number of Residues6
Detailsbinding site for residue MG A 404
ChainResidue
ALYS65
AGLU85
AHOH566
AHOH570
AHOH650
AHOH691

Functional Information from PROSITE/UniProt
site_idPS00893
Number of Residues22
DetailsNUDIX_BOX Nudix box signature. GkldqgEtepvAAaREIhEEtG
ChainResidueDetails
AGLY66-GLY87

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues21
DetailsMotif: {"description":"Nudix box","evidences":[{"source":"PROSITE-ProRule","id":"PRU00794","evidenceCode":"ECO:0000255"}]}
ChainResidueDetails

site_idSWS_FT_FI2
Number of Residues12
DetailsBinding site: {"evidences":[{"source":"PubMed","id":"28375146","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"28705712","evidenceCode":"ECO:0000269"}]}
ChainResidueDetails

site_idSWS_FT_FI3
Number of Residues1
DetailsBinding site: {"evidences":[{"source":"PubMed","id":"28375146","evidenceCode":"ECO:0000269"}]}
ChainResidueDetails

246704

PDB entries from 2025-12-24

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