Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

5G5V

Crystal structure of T. brucei PDE-B1 catalytic domain with inhibitor NPD-038

Functional Information from GO Data
ChainGOidnamespacecontents
A0004114molecular_function3',5'-cyclic-nucleotide phosphodiesterase activity
A0007165biological_processsignal transduction
A0008081molecular_functionphosphoric diester hydrolase activity
B0004114molecular_function3',5'-cyclic-nucleotide phosphodiesterase activity
B0007165biological_processsignal transduction
B0008081molecular_functionphosphoric diester hydrolase activity
Functional Information from PDB Data
site_idAC1
Number of Residues6
DetailsBINDING SITE FOR RESIDUE ZN A 1918
ChainResidue
AHIS673
AHIS709
AASP710
AASP822
AHOH2073
AHOH2095

site_idAC2
Number of Residues6
DetailsBINDING SITE FOR RESIDUE MG A 1919
ChainResidue
AHOH2095
AHOH2096
AHOH2121
AASP710
AHOH2071
AHOH2094

site_idAC3
Number of Residues6
DetailsBINDING SITE FOR RESIDUE GAI A 1920
ChainResidue
AASP712
AMET714
ATYR721
ALEU728
ALEU741
AHIS744

site_idAC4
Number of Residues4
DetailsBINDING SITE FOR RESIDUE GAI A 1921
ChainResidue
ASER604
APHE605
AASP606
AEDO1929

site_idAC5
Number of Residues5
DetailsBINDING SITE FOR RESIDUE GAI A 1922
ChainResidue
AGLY715
AGLU843
APHE844
AGLN847
AHOH2223

site_idAC6
Number of Residues1
DetailsBINDING SITE FOR RESIDUE EDO A 1923
ChainResidue
AHOH2082

site_idAC7
Number of Residues5
DetailsBINDING SITE FOR RESIDUE EDO A 1924
ChainResidue
ATYR633
AASP649
AGLU650
AEDO1928
BLYS644

site_idAC8
Number of Residues2
DetailsBINDING SITE FOR RESIDUE EDO A 1925
ChainResidue
AHIS682
AHOH2037

site_idAC9
Number of Residues6
DetailsBINDING SITE FOR RESIDUE EDO A 1926
ChainResidue
APHE615
AARG618
APRO667
AASN670
ATRP836
AALA839

site_idBC1
Number of Residues6
DetailsBINDING SITE FOR RESIDUE EDO A 1927
ChainResidue
ALYS723
AGLN847
AGLU851
AVAL858
ALEU859
APHE862

site_idBC2
Number of Residues3
DetailsBINDING SITE FOR RESIDUE EDO A 1928
ChainResidue
ALYS591
AARG594
AEDO1924

site_idBC3
Number of Residues6
DetailsBINDING SITE FOR RESIDUE EDO A 1929
ChainResidue
APHE605
AGLU611
APHE612
AASP613
AARG616
AGAI1921

site_idBC4
Number of Residues6
DetailsBINDING SITE FOR RESIDUE FMT A 1930
ChainResidue
ALEU753
ASER754
AASP755
APRO756
AASP759
AASP762

site_idBC5
Number of Residues6
DetailsBINDING SITE FOR RESIDUE GAI A 1931
ChainResidue
AGLY646
AHOH2040
AHOH2224
BLEU694
BHOH2072
BHOH2080

site_idBC6
Number of Residues5
DetailsBINDING SITE FOR RESIDUE EDO A 1932
ChainResidue
AGLN643
AASP649
BLYS644
BLEU697
BHOH2117

site_idBC7
Number of Residues6
DetailsBINDING SITE FOR RESIDUE EDO A 1933
ChainResidue
AGLY688
AASN689
ALEU894
AGLN895
AGLY896
AHOH2225

site_idBC8
Number of Residues3
DetailsBINDING SITE FOR RESIDUE GAI A 1934
ChainResidue
AGLU692
ALEU694
AHIS810

site_idBC9
Number of Residues9
DetailsBINDING SITE FOR RESIDUE GAI A 1935
ChainResidue
ALYS644
APHE645
AGLY646
AGLY763
BGLU692
BLYS693
BGLU806
BHIS810
BHOH2074

site_idCC1
Number of Residues11
DetailsBINDING SITE FOR RESIDUE 8Z4 A 1936
ChainResidue
AGLY873
AGLN874
AHOH2140
AMET785
AASP822
AVAL840
ATHR841
ATYR845
AMET861
AASN867
ALEU870

site_idCC2
Number of Residues6
DetailsBINDING SITE FOR RESIDUE ZN B 1919
ChainResidue
BHIS673
BHIS709
BASP710
BASP822
BHOH2062
BHOH2084

site_idCC3
Number of Residues6
DetailsBINDING SITE FOR RESIDUE MG B 1920
ChainResidue
BASP710
BHOH2060
BHOH2083
BHOH2084
BHOH2085
BHOH2104

site_idCC4
Number of Residues6
DetailsBINDING SITE FOR RESIDUE GAI B 1921
ChainResidue
BGLY688
BASN689
BLYS693
BLEU894
BGLN895
BGLY896

site_idCC5
Number of Residues2
DetailsBINDING SITE FOR RESIDUE GAI B 1922
ChainResidue
BHOH2135
BHOH2142

site_idCC6
Number of Residues2
DetailsBINDING SITE FOR RESIDUE GAI B 1923
ChainResidue
BHIS682
BHOH2036

site_idCC7
Number of Residues4
DetailsBINDING SITE FOR RESIDUE EDO B 1924
ChainResidue
BASP606
BASP609
BGLU611
BHOH2021

site_idCC8
Number of Residues3
DetailsBINDING SITE FOR RESIDUE EDO A 1937
ChainResidue
AARG769
ATHR770
BGLU725

site_idCC9
Number of Residues4
DetailsBINDING SITE FOR RESIDUE EDO B 1925
ChainResidue
BGLU698
BLEU771
BHIS810
BHOH2079

site_idDC1
Number of Residues6
DetailsBINDING SITE FOR RESIDUE FMT B 1926
ChainResidue
BPHE615
BARG618
BPRO667
BASN670
BTRP836
BHOH2219

site_idDC2
Number of Residues6
DetailsBINDING SITE FOR RESIDUE GAI B 1927
ChainResidue
BLEU753
BSER754
BASP759
BASP762
BLEU915
BHOH2173

site_idDC3
Number of Residues3
DetailsBINDING SITE FOR RESIDUE GAI B 1928
ChainResidue
BASP778
BLYS787
BHOH2147

Functional Information from PROSITE/UniProt
site_idPS00126
Number of Residues12
DetailsPDEASE_I_1 3'5'-cyclic nucleotide phosphodiesterase domain signature. HDLdHmGlnNsF
ChainResidueDetails
AHIS709-PHE720

222415

PDB entries from 2024-07-10

PDB statisticsPDBj update infoContact PDBjnumon