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5G5T

Structure of the Argonaute protein from Methanocaldcoccus janaschii in complex with guide DNA

Functional Information from GO Data
ChainGOidnamespacecontents
A0003676molecular_functionnucleic acid binding
A0003677molecular_functionDNA binding
A0003723molecular_functionRNA binding
A0004519molecular_functionendonuclease activity
A0004520molecular_functionDNA endonuclease activity
A0006259biological_processDNA metabolic process
A0044355biological_processclearance of foreign intracellular DNA
A0046872molecular_functionmetal ion binding
A0051607biological_processdefense response to virus
Functional Information from PDB Data
site_idAC1
Number of Residues5
DetailsBINDING SITE FOR RESIDUE MG A 1714
ChainResidue
AGLN457
AGLN479
ALYS483
DDT1
DDA3

site_idAC2
Number of Residues5
DetailsBINDING SITE FOR RESIDUE SO4 A 1715
ChainResidue
AGLY571
AASP504
ATHR505
AARG569
AASP570

site_idAC3
Number of Residues5
DetailsBINDING SITE FOR RESIDUE SO4 A 1716
ChainResidue
AHIS145
APHE616
AGLY617
AASN618
ALYS651

site_idAC4
Number of Residues3
DetailsBINDING SITE FOR RESIDUE SO4 A 1717
ChainResidue
ALYS163
ATHR607
ASER608

site_idAC5
Number of Residues4
DetailsBINDING SITE FOR RESIDUE SO4 A 1718
ChainResidue
AGLU18
APHE19
AHIS110
AARG293

site_idAC6
Number of Residues3
DetailsBINDING SITE FOR RESIDUE SO4 A 1719
ChainResidue
AASP296
AASN297
ATHR298

site_idAC7
Number of Residues3
DetailsBINDING SITE FOR RESIDUE SO4 A 1720
ChainResidue
AHIS126
ALYS133
ALYS187

site_idAC8
Number of Residues4
DetailsBINDING SITE FOR RESIDUE SO4 A 1721
ChainResidue
AGLU349
ALYS487
AARG529
AHIS707

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues4
DetailsACT_SITE: ACT_SITE => ECO:0000250|UniProtKB:Q746M7
ChainResidueDetails
AASP504
AGLU541
AASP570
AASP688

site_idSWS_FT_FI2
Number of Residues1
DetailsBINDING: BINDING => ECO:0007744|PDB:5G5T
ChainResidueDetails
AGLN457

site_idSWS_FT_FI3
Number of Residues2
DetailsBINDING: BINDING => ECO:0000305|PubMed:28319084
ChainResidueDetails
AGLN479
ALYS483

site_idSWS_FT_FI4
Number of Residues4
DetailsBINDING: BINDING => ECO:0000250|UniProtKB:Q746M7
ChainResidueDetails
AASP504
AASP570
AASP688
AILE713

site_idSWS_FT_FI5
Number of Residues6
DetailsSITE: Interacts with gDNA => ECO:0000269|PubMed:28319084, ECO:0007744|PDB:5G5T
ChainResidueDetails
ALYS107
AHIS157
ALYS191
ATYR217
AGLN479
ASER669

site_idSWS_FT_FI6
Number of Residues1
DetailsSITE: Interacts with 3'-end of gDNA => ECO:0000269|PubMed:28319084, ECO:0007744|PDB:5G5T
ChainResidueDetails
ATYR194

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PDB entries from 2024-07-17

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