5G0R
METHYL-COENZYME M REDUCTASE I FROM METHANOTHERMOBACTER MARBURGENSIS EXPOSED TO 3-NITROOXYPROPANOL
Functional Information from GO Data
Chain | GOid | namespace | contents |
A | 0005737 | cellular_component | cytoplasm |
A | 0015948 | biological_process | methanogenesis |
A | 0016740 | molecular_function | transferase activity |
A | 0046872 | molecular_function | metal ion binding |
A | 0050524 | molecular_function | coenzyme-B sulfoethylthiotransferase activity |
B | 0005737 | cellular_component | cytoplasm |
B | 0015948 | biological_process | methanogenesis |
B | 0016740 | molecular_function | transferase activity |
B | 0050524 | molecular_function | coenzyme-B sulfoethylthiotransferase activity |
C | 0005737 | cellular_component | cytoplasm |
C | 0015948 | biological_process | methanogenesis |
C | 0016740 | molecular_function | transferase activity |
C | 0050524 | molecular_function | coenzyme-B sulfoethylthiotransferase activity |
D | 0005737 | cellular_component | cytoplasm |
D | 0015948 | biological_process | methanogenesis |
D | 0016740 | molecular_function | transferase activity |
D | 0046872 | molecular_function | metal ion binding |
D | 0050524 | molecular_function | coenzyme-B sulfoethylthiotransferase activity |
E | 0005737 | cellular_component | cytoplasm |
E | 0015948 | biological_process | methanogenesis |
E | 0016740 | molecular_function | transferase activity |
E | 0050524 | molecular_function | coenzyme-B sulfoethylthiotransferase activity |
F | 0005737 | cellular_component | cytoplasm |
F | 0015948 | biological_process | methanogenesis |
F | 0016740 | molecular_function | transferase activity |
F | 0050524 | molecular_function | coenzyme-B sulfoethylthiotransferase activity |
Functional Information from PDB Data
site_id | AC1 |
Number of Residues | 4 |
Details | BINDING SITE FOR RESIDUE MG A 551 |
Chain | Residue |
A | HOH2258 |
A | HOH2261 |
A | HOH2630 |
A | HOH2631 |
site_id | AC2 |
Number of Residues | 6 |
Details | BINDING SITE FOR RESIDUE MG A 553 |
Chain | Residue |
A | HOH2634 |
A | HOH2576 |
A | HOH2579 |
A | HOH2589 |
A | HOH2632 |
A | HOH2633 |
site_id | AC3 |
Number of Residues | 39 |
Details | BINDING SITE FOR RESIDUE F43 A 554 |
Chain | Residue |
A | ALA144 |
A | VAL145 |
A | VAL146 |
A | GLN147 |
A | GLN230 |
A | MET233 |
A | ALA243 |
A | HOH2267 |
A | HOH2271 |
A | HOH2272 |
A | HOH2273 |
A | HOH2375 |
D | GLY326 |
D | GLY327 |
D | VAL328 |
D | GLY329 |
D | PHE330 |
D | THR331 |
D | GLN332 |
D | TYR333 |
D | PHE396 |
D | GLY397 |
D | GLY442 |
D | PHE443 |
D | HOH2395 |
D | HOH2451 |
E | SER365 |
E | ILE366 |
E | TYR367 |
F | LEU117 |
F | SER118 |
F | GLY119 |
F | LYS153 |
F | SER154 |
F | VAL155 |
F | HIS156 |
F | HIS158 |
F | HOH2145 |
F | HOH2167 |
site_id | AC4 |
Number of Residues | 21 |
Details | BINDING SITE FOR RESIDUE TP7 A 557 |
Chain | Residue |
A | ARG270 |
A | LEU320 |
A | MET324 |
A | PHE330 |
A | PHE443 |
A | MET480 |
A | ASN481 |
A | VAL482 |
A | HOH2411 |
A | HOH2419 |
A | HOH2563 |
B | TYR367 |
B | GLY369 |
B | HIS379 |
B | ILE380 |
B | HOH2452 |
B | HOH2453 |
B | HOH2454 |
D | ARG225 |
D | LYS256 |
D | MHS257 |
site_id | AC5 |
Number of Residues | 8 |
Details | BINDING SITE FOR RESIDUE K A 1550 |
Chain | Residue |
A | ARG102 |
A | SER215 |
A | ARG216 |
A | CYS218 |
D | ARG102 |
D | SER215 |
D | ARG216 |
D | CYS218 |
site_id | AC6 |
Number of Residues | 6 |
Details | BINDING SITE FOR RESIDUE MG A 562 |
Chain | Residue |
A | HOH2136 |
A | HOH2138 |
A | HOH2635 |
B | ASN441 |
D | HOH2257 |
D | HOH2283 |
site_id | AC7 |
Number of Residues | 6 |
Details | BINDING SITE FOR RESIDUE MG A 563 |
Chain | Residue |
A | LYS11 |
A | PHE14 |
A | HOH2033 |
A | HOH2034 |
A | HOH2035 |
A | HOH2046 |
site_id | AC8 |
Number of Residues | 6 |
Details | BINDING SITE FOR RESIDUE NA A 564 |
Chain | Residue |
A | PRO58 |
A | ILE60 |
A | THR62 |
A | HOH2148 |
A | HOH2155 |
A | HOH2163 |
site_id | AC9 |
Number of Residues | 5 |
Details | BINDING SITE FOR RESIDUE MG B 444 |
Chain | Residue |
B | HOH2510 |
B | HOH2511 |
B | HOH2368 |
B | HOH2369 |
B | HOH2509 |
site_id | BC1 |
Number of Residues | 6 |
Details | BINDING SITE FOR RESIDUE MG C 250 |
Chain | Residue |
C | GLU30 |
C | HOH2053 |
C | HOH2054 |
C | HOH2064 |
C | HOH2158 |
F | HOH2055 |
site_id | BC2 |
Number of Residues | 5 |
Details | BINDING SITE FOR RESIDUE MG C 251 |
Chain | Residue |
C | HOH2231 |
C | HOH2236 |
C | HOH2261 |
C | HOH2262 |
C | HOH2263 |
site_id | BC3 |
Number of Residues | 6 |
Details | BINDING SITE FOR RESIDUE MG D 551 |
Chain | Residue |
D | HOH2505 |
D | HOH2507 |
D | HOH2508 |
D | HOH2518 |
E | HOH2062 |
E | HOH2181 |
site_id | BC4 |
Number of Residues | 38 |
Details | BINDING SITE FOR RESIDUE F43 D 552 |
Chain | Residue |
A | GLY326 |
A | GLY327 |
A | VAL328 |
A | GLY329 |
A | PHE330 |
A | THR331 |
A | GLN332 |
A | TYR333 |
A | PHE396 |
A | GLY397 |
A | GLY442 |
A | PHE443 |
A | HOH2456 |
A | HOH2457 |
A | HOH2514 |
B | SER365 |
B | ILE366 |
B | TYR367 |
C | LEU117 |
C | SER118 |
C | GLY119 |
C | LYS153 |
C | SER154 |
C | VAL155 |
C | HIS156 |
C | HIS158 |
C | HOH2133 |
C | HOH2175 |
C | HOH2176 |
C | HOH2177 |
D | ALA144 |
D | VAL145 |
D | VAL146 |
D | GLN147 |
D | GLN230 |
D | MET233 |
D | ALA243 |
D | HOH2247 |
site_id | BC5 |
Number of Residues | 22 |
Details | BINDING SITE FOR RESIDUE TP7 D 556 |
Chain | Residue |
A | ARG225 |
A | LYS256 |
A | MHS257 |
A | HOH2393 |
D | ARG270 |
D | LEU320 |
D | MET324 |
D | SER325 |
D | PHE330 |
D | PHE443 |
D | MET480 |
D | ASN481 |
D | VAL482 |
D | HOH2353 |
D | HOH2360 |
D | HOH2491 |
E | TYR367 |
E | GLY369 |
E | HIS379 |
E | ILE380 |
E | HOH2366 |
E | HOH2367 |
site_id | BC6 |
Number of Residues | 6 |
Details | BINDING SITE FOR RESIDUE MG D 557 |
Chain | Residue |
D | LYS11 |
D | PHE14 |
D | HOH2034 |
D | HOH2035 |
D | HOH2037 |
D | HOH2049 |
site_id | BC7 |
Number of Residues | 6 |
Details | BINDING SITE FOR RESIDUE NA D 558 |
Chain | Residue |
A | HOH2265 |
A | HOH2268 |
D | PRO58 |
D | ILE60 |
D | THR62 |
D | HOH2166 |
site_id | BC8 |
Number of Residues | 4 |
Details | BINDING SITE FOR RESIDUE MG E 444 |
Chain | Residue |
E | HOH2327 |
E | HOH2328 |
E | HOH2407 |
E | HOH2408 |
site_id | BC9 |
Number of Residues | 5 |
Details | BINDING SITE FOR RESIDUE MG E 445 |
Chain | Residue |
E | ASP147 |
E | HOH2218 |
E | HOH2219 |
E | HOH2220 |
E | HOH2409 |
site_id | CC1 |
Number of Residues | 7 |
Details | BINDING SITE FOR RESIDUE MG E 446 |
Chain | Residue |
A | HOH2390 |
E | HOH2234 |
E | HOH2260 |
E | HOH2261 |
E | HOH2410 |
E | HOH2411 |
E | HOH2412 |
site_id | CC2 |
Number of Residues | 6 |
Details | BINDING SITE FOR RESIDUE MG F 250 |
Chain | Residue |
C | HOH2052 |
F | GLU30 |
F | HOH2056 |
F | HOH2057 |
F | HOH2068 |
F | HOH2155 |
site_id | CC3 |
Number of Residues | 2 |
Details | BINDING SITE FOR RESIDUE CL B 1444 |
Chain | Residue |
B | ARG235 |
C | LEU248 |
site_id | CC4 |
Number of Residues | 3 |
Details | BINDING SITE FOR RESIDUE CL E 1444 |
Chain | Residue |
E | ARG235 |
E | HOH2139 |
F | LEU248 |
site_id | CC5 |
Number of Residues | 2 |
Details | BINDING SITE FOR RESIDUE CL A 1551 |
Chain | Residue |
A | GLY61 |
D | HIS131 |
site_id | CC6 |
Number of Residues | 6 |
Details | BINDING SITE FOR RESIDUE MG A 1500 |
Chain | Residue |
A | HOH2636 |
A | HOH2637 |
A | HOH2638 |
B | HOH2290 |
B | HOH2322 |
B | HOH2323 |
site_id | CC7 |
Number of Residues | 6 |
Details | BINDING SITE FOR RESIDUE MG E 1500 |
Chain | Residue |
E | ASP99 |
E | THR101 |
E | HOH2162 |
E | HOH2182 |
E | HOH2183 |
E | HOH2413 |
site_id | CC8 |
Number of Residues | 6 |
Details | BINDING SITE FOR RESIDUE MG D 1500 |
Chain | Residue |
D | HOH2411 |
D | HOH2412 |
D | HOH2539 |
D | HOH2540 |
D | HOH2541 |
D | HOH2542 |
site_id | CC9 |
Number of Residues | 3 |
Details | BINDING SITE FOR RESIDUE MG A 1501 |
Chain | Residue |
A | HOH2301 |
A | HOH2302 |
A | HOH2640 |
site_id | DC1 |
Number of Residues | 2 |
Details | BINDING SITE FOR RESIDUE NA A 1502 |
Chain | Residue |
A | HIS131 |
D | GLY61 |
Functional Information from SwissProt/UniProt
site_id | SWS_FT_FI1 |
Number of Residues | 2 |
Details | BINDING: BINDING => ECO:0000269|PubMed:11491299, ECO:0000269|PubMed:20707311, ECO:0000269|PubMed:21438550, ECO:0000269|PubMed:27467699, ECO:0007744|PDB:1HBN, ECO:0007744|PDB:3M1V, ECO:0007744|PDB:3POT, ECO:0007744|PDB:5A0Y |
Chain | Residue | Details |
C | ARG120 | |
F | ARG120 |
site_id | SWS_FT_FI2 |
Number of Residues | 2 |
Details | BINDING: BINDING => ECO:0000269|PubMed:11491299, ECO:0000269|PubMed:20707311, ECO:0000269|PubMed:21438550, ECO:0000269|PubMed:27140643, ECO:0000269|PubMed:27467699, ECO:0000269|PubMed:9367957, ECO:0007744|PDB:1HBN, ECO:0007744|PDB:1MRO, ECO:0007744|PDB:3M1V, ECO:0007744|PDB:3POT, ECO:0007744|PDB:5A0Y, ECO:0007744|PDB:5G0R |
Chain | Residue | Details |
B | GLY369 | |
E | GLY369 | |
D | ARG225 | |
D | LYS256 |
site_id | SWS_FT_FI3 |
Number of Residues | 2 |
Details | BINDING: in chain B => ECO:0000269|PubMed:11491299, ECO:0000269|PubMed:20707311, ECO:0000269|PubMed:21438550, ECO:0000269|PubMed:27140643, ECO:0000269|PubMed:27467699, ECO:0000269|PubMed:9367957, ECO:0007744|PDB:1HBN, ECO:0007744|PDB:1MRO, ECO:0007744|PDB:3M1V, ECO:0007744|PDB:3POT, ECO:0007744|PDB:5A0Y, ECO:0007744|PDB:5G0R |
Chain | Residue | Details |
A | ARG270 | |
D | ARG270 |
site_id | SWS_FT_FI4 |
Number of Residues | 4 |
Details | BINDING: BINDING => ECO:0000269|PubMed:11491299, ECO:0000269|PubMed:20707311, ECO:0000269|PubMed:21438550, ECO:0000269|PubMed:27467699, ECO:0000269|PubMed:9367957, ECO:0007744|PDB:1HBN, ECO:0007744|PDB:1MRO, ECO:0007744|PDB:3M1V, ECO:0007744|PDB:3POT, ECO:0007744|PDB:5A0Y |
Chain | Residue | Details |
A | TYR333 | |
A | TYR444 | |
D | TYR333 | |
D | TYR444 |
site_id | SWS_FT_FI5 |
Number of Residues | 2 |
Details | MOD_RES: Pros-methylhistidine => ECO:0000269|PubMed:10660523, ECO:0000269|PubMed:11491299, ECO:0000269|PubMed:20707311, ECO:0000269|PubMed:21438550, ECO:0000269|PubMed:27467699, ECO:0000269|PubMed:9367957 |
Chain | Residue | Details |
A | MHS257 | |
D | MHS257 |
site_id | SWS_FT_FI6 |
Number of Residues | 2 |
Details | MOD_RES: 5-methylarginine => ECO:0000269|PubMed:10660523, ECO:0000269|PubMed:11491299, ECO:0000269|PubMed:20707311, ECO:0000269|PubMed:21438550, ECO:0000269|PubMed:27467699, ECO:0000269|PubMed:9367957 |
Chain | Residue | Details |
A | AGM271 | |
D | AGM271 |
site_id | SWS_FT_FI7 |
Number of Residues | 2 |
Details | MOD_RES: 2-methylglutamine => ECO:0000269|PubMed:10660523, ECO:0000269|PubMed:11491299, ECO:0000269|PubMed:20707311, ECO:0000269|PubMed:21438550, ECO:0000269|PubMed:27467699, ECO:0000269|PubMed:9367957 |
Chain | Residue | Details |
A | MGN400 | |
D | MGN400 |
site_id | SWS_FT_FI8 |
Number of Residues | 2 |
Details | MOD_RES: 1-thioglycine => ECO:0000269|PubMed:10660523, ECO:0000269|PubMed:11491299, ECO:0000269|PubMed:20707311, ECO:0000269|PubMed:21438550, ECO:0000269|PubMed:27467699, ECO:0000269|PubMed:9367957 |
Chain | Residue | Details |
A | GL3445 | |
D | GL3445 |
site_id | SWS_FT_FI9 |
Number of Residues | 2 |
Details | MOD_RES: (Z)-2,3-didehydroaspartate => ECO:0000269|PubMed:27467699 |
Chain | Residue | Details |
A | DYA450 | |
D | DYA450 |
site_id | SWS_FT_FI10 |
Number of Residues | 2 |
Details | MOD_RES: S-methylcysteine => ECO:0000269|PubMed:10660523, ECO:0000269|PubMed:11491299, ECO:0000269|PubMed:20707311, ECO:0000269|PubMed:21438550, ECO:0000269|PubMed:27467699, ECO:0000269|PubMed:9367957 |
Chain | Residue | Details |
A | SMC452 | |
D | SMC452 |
Catalytic Information from CSA
site_id | MCSA1 |
Number of Residues | 1 |
Details | M-CSA 156 |
Chain | Residue | Details |
B | TYR367 | electrostatic stabiliser, proton acceptor, proton donor, proton relay, radical stabiliser |
A | TYR333 | electrostatic stabiliser, radical stabiliser |
A | GL3445 | single electron acceptor, single electron donor, single electron relay |
A | ASN481 | activator, electrostatic stabiliser, proton acceptor, proton donor, proton relay |
site_id | MCSA2 |
Number of Residues | 1 |
Details | M-CSA 156 |
Chain | Residue | Details |
E | TYR367 | electrostatic stabiliser, proton acceptor, proton donor, proton relay, radical stabiliser |
D | TYR333 | electrostatic stabiliser, radical stabiliser |
D | GL3445 | single electron acceptor, single electron donor, single electron relay |
D | ASN481 | activator, electrostatic stabiliser, proton acceptor, proton donor, proton relay |