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5FZI

Crystal structure of the catalytic domain of human JARID1B in complex with MC3095

Functional Information from PDB Data
site_idAC1
Number of Residues4
DetailsBINDING SITE FOR RESIDUE ZN A 1754
ChainResidue
ACYS692
ACYS695
ACYS715
AHIS718

site_idAC2
Number of Residues6
DetailsBINDING SITE FOR RESIDUE MN A 1755
ChainResidue
AHOH2148
AHIS499
AGLU501
AHIS587
AHOH2140
AHOH2141

site_idAC3
Number of Residues6
DetailsBINDING SITE FOR RESIDUE EDO A 1757
ChainResidue
AASP630
ACYS699
APHE700
AMET701
ASER702
AHOH2196

site_idAC4
Number of Residues6
DetailsBINDING SITE FOR RESIDUE EDO A 1758
ChainResidue
APHE83
AGLY426
AALA427
ALEU487
AVAL489
AHOH2107

site_idAC5
Number of Residues5
DetailsBINDING SITE FOR RESIDUE EDO A 1759
ChainResidue
AARG666
ASER677
ALEU732
ATHR737
AHOH2216

site_idAC6
Number of Residues5
DetailsBINDING SITE FOR RESIDUE EDO A 1760
ChainResidue
AARG612
AASP630
AMET658
AGLU662
ALEU665

site_idAC7
Number of Residues2
DetailsBINDING SITE FOR RESIDUE EDO A 1761
ChainResidue
AVAL568
ATYR569

site_idAC8
Number of Residues7
DetailsBINDING SITE FOR RESIDUE EDO A 1762
ChainResidue
AASP688
AGLU689
AARG690
AGLN691
AVAL693
AGLY711
ALEU713

site_idAC9
Number of Residues4
DetailsBINDING SITE FOR RESIDUE EDO A 1763
ChainResidue
AGLY524
ATYR525
AARG584
AHOH2262

site_idBC1
Number of Residues5
DetailsBINDING SITE FOR RESIDUE EDO A 1764
ChainResidue
AARG670
AVAL674
AILE675
AHOH2104
AHOH2215

site_idBC2
Number of Residues2
DetailsBINDING SITE FOR RESIDUE EDO A 1765
ChainResidue
AHIS564
AGLU565

site_idBC3
Number of Residues5
DetailsBINDING SITE FOR RESIDUE EDO A 1766
ChainResidue
ATRP39
AASP69
ATRP70
AGLU453
AHOH2031

site_idBC4
Number of Residues3
DetailsBINDING SITE FOR RESIDUE EDO A 1767
ChainResidue
ALEU716
AHIS717
AHOH2263

site_idBC5
Number of Residues4
DetailsBINDING SITE FOR RESIDUE EDO A 1768
ChainResidue
AALA75
AGLY435
ASER436
APHE596

site_idBC6
Number of Residues6
DetailsBINDING SITE FOR RESIDUE EDO A 1769
ChainResidue
AVAL615
AGLU616
AARG619
ATHR697
AHOH2179
AHOH2250

site_idBC7
Number of Residues3
DetailsBINDING SITE FOR RESIDUE EDO A 1770
ChainResidue
AMET385
ATHR422
AGLU424

site_idBC8
Number of Residues3
DetailsBINDING SITE FOR RESIDUE EDO A 1771
ChainResidue
ALYS80
ALEU722
ACYS723

site_idBC9
Number of Residues4
DetailsBINDING SITE FOR RESIDUE EDO A 1772
ChainResidue
ALYS446
ASER448
ASER707
ALYS729

site_idCC1
Number of Residues2
DetailsBINDING SITE FOR RESIDUE EDO A 1773
ChainResidue
APHE74
AHIS512

site_idCC2
Number of Residues6
DetailsBINDING SITE FOR RESIDUE EDO A 1774
ChainResidue
AMET534
ALEU541
APHE542
ALEU552
ATYR586
AHOH2138

site_idCC3
Number of Residues7
DetailsBINDING SITE FOR RESIDUE DMS A 1775
ChainResidue
AGLN88
ATHR97
ATYR425
ASER495
APHE496
ACYS497
AFIG1778

site_idCC4
Number of Residues6
DetailsBINDING SITE FOR RESIDUE DMS A 1776
ChainResidue
AHOH2140
AHOH2152
ATRP486
ATYR488
AVAL600
AASN601

site_idCC5
Number of Residues8
DetailsBINDING SITE FOR RESIDUE DMS A 1777
ChainResidue
AILE500
ATRP504
AHIS617
ATYR618
ALEU621
AHOH2146
AHOH2169
AHOH2171

site_idCC6
Number of Residues11
DetailsBINDING SITE FOR RESIDUE FIG A 1778
ChainResidue
AARG98
AVAL99
ATYR488
AHIS499
AILE500
AASN509
ALYS517
ADMS1775
AHOH2141
AHOH2152
AHOH2162

site_idCC7
Number of Residues6
DetailsBINDING SITE FOR RESIDUE PO4 A 1779
ChainResidue
ACYS634
ALYS635
AGLU683
APHE700
ATYR736
AHOH2198

site_idCC8
Number of Residues5
DetailsBINDING SITE FOR RESIDUE CL A 1780
ChainResidue
ALEU90
AASN91
ALEU413
ATHR416
AGLU419

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues52
DetailsZN_FING: C5HC2 => ECO:0000269|PubMed:26741168, ECO:0000269|PubMed:27214403, ECO:0000269|PubMed:28262558
ChainResidueDetails
ACYS692-MET744

site_idSWS_FT_FI2
Number of Residues4
DetailsBINDING: BINDING => ECO:0000250|UniProtKB:P29375
ChainResidueDetails
ATYR425
ASER507
AASN509
ALYS517

site_idSWS_FT_FI3
Number of Residues3
DetailsBINDING: BINDING => ECO:0000305|PubMed:26741168, ECO:0000305|PubMed:27214403, ECO:0000305|PubMed:28262558
ChainResidueDetails
AHIS499
AGLU501
AHIS587

site_idSWS_FT_FI4
Number of Residues2
DetailsCROSSLNK: Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in SUMO2) => ECO:0007744|PubMed:25755297, ECO:0007744|PubMed:28112733
ChainResidueDetails
ALYS769

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PDB entries from 2024-07-24

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