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5FZG

Crystal structure of the catalytic domain of human JARID1B in complex with MC3948

Functional Information from PDB Data
site_idAC1
Number of Residues4
DetailsBINDING SITE FOR RESIDUE ZN A 1754
ChainResidue
ACYS692
ACYS695
ACYS715
AHIS718

site_idAC2
Number of Residues4
DetailsBINDING SITE FOR RESIDUE ZN A 1755
ChainResidue
ACYS706
ACYS708
ACYS723
ACYS725

site_idAC3
Number of Residues5
DetailsBINDING SITE FOR RESIDUE CL A 1756
ChainResidue
AASN91
ALEU413
ATHR416
AGLU419
ALEU90

site_idAC4
Number of Residues6
DetailsBINDING SITE FOR RESIDUE MN A 1757
ChainResidue
AHIS499
AGLU501
AHIS587
A7IA1770
AHOH2064
AHOH2141

site_idAC5
Number of Residues14
DetailsBINDING SITE FOR RESIDUE EPE A 1758
ChainResidue
AILE500
ATRP504
AGLU531
ALEU541
APHE542
ALEU552
AARG584
ATYR586
AHIS617
ATYR618
ALEU621
AARG623
AHOH2133
AHOH2139

site_idAC6
Number of Residues6
DetailsBINDING SITE FOR RESIDUE EDO A 1759
ChainResidue
AASP630
ACYS699
APHE700
AMET701
ASER702
AHOH2191

site_idAC7
Number of Residues7
DetailsBINDING SITE FOR RESIDUE EDO A 1760
ChainResidue
APHE83
AGLY426
AALA427
APHE434
ALEU487
AVAL489
AHOH2111

site_idAC8
Number of Residues6
DetailsBINDING SITE FOR RESIDUE EDO A 1761
ChainResidue
AARG666
ALEU732
ATYR734
ATHR737
AHOH2256
AHOH2263

site_idAC9
Number of Residues5
DetailsBINDING SITE FOR RESIDUE EDO A 1762
ChainResidue
AARG612
AASP630
AMET658
AGLU662
AEDO1767

site_idBC1
Number of Residues3
DetailsBINDING SITE FOR RESIDUE EDO A 1763
ChainResidue
APRO30
AVAL568
ATYR569

site_idBC2
Number of Residues8
DetailsBINDING SITE FOR RESIDUE EDO A 1764
ChainResidue
AASP688
AGLU689
AARG690
AGLN691
AVAL693
AGLY711
ALEU712
ALEU713

site_idBC3
Number of Residues3
DetailsBINDING SITE FOR RESIDUE EDO A 1765
ChainResidue
AGLY524
ATYR525
AHOH2265

site_idBC4
Number of Residues4
DetailsBINDING SITE FOR RESIDUE EDO A 1766
ChainResidue
AVAL674
AILE675
AHOH2102
AHOH2211

site_idBC5
Number of Residues6
DetailsBINDING SITE FOR RESIDUE EDO A 1767
ChainResidue
AVAL615
AARG619
ATHR697
AEDO1762
AHOH2177
AHOH2266

site_idBC6
Number of Residues9
DetailsBINDING SITE FOR RESIDUE DMS A 1768
ChainResidue
AGLN88
ATHR97
AARG98
ATYR425
ASER495
APHE496
ACYS497
A7IA1770
AHOH2062

site_idBC7
Number of Residues6
DetailsBINDING SITE FOR RESIDUE DMS A 1769
ChainResidue
ATRP486
ATYR488
AALA599
AVAL600
AASN601
AHOH2064

site_idBC8
Number of Residues14
DetailsBINDING SITE FOR RESIDUE 7IA A 1770
ChainResidue
APHE496
AHIS499
AASN509
ALYS517
AHIS587
AASN591
AMN1757
ADMS1768
AHOH2064
AHOH2130
AHOH2141
AARG98
ATYR425
ATYR488

site_idBC9
Number of Residues6
DetailsBINDING SITE FOR RESIDUE 7IA A 1771
ChainResidue
AGLU31
ACYS32
APRO33
AVAL34
AILE55
AHOH2008

site_idCC1
Number of Residues5
DetailsBINDING SITE FOR RESIDUE PO4 A 1772
ChainResidue
AHIS622
ALYS694
AHIS718
AHOH2183
AHOH2267

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues52
DetailsZN_FING: C5HC2 => ECO:0000269|PubMed:26741168, ECO:0000269|PubMed:27214403, ECO:0000269|PubMed:28262558
ChainResidueDetails
ACYS692-MET744

site_idSWS_FT_FI2
Number of Residues4
DetailsBINDING: BINDING => ECO:0000250|UniProtKB:P29375
ChainResidueDetails
ALYS517
ATYR425
ASER507
AASN509

site_idSWS_FT_FI3
Number of Residues3
DetailsBINDING: BINDING => ECO:0000305|PubMed:26741168, ECO:0000305|PubMed:27214403, ECO:0000305|PubMed:28262558
ChainResidueDetails
AHIS499
AGLU501
AHIS587

site_idSWS_FT_FI4
Number of Residues2
DetailsCROSSLNK: Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in SUMO2) => ECO:0007744|PubMed:25755297, ECO:0007744|PubMed:28112733
ChainResidueDetails
ALYS769

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PDB entries from 2024-06-12

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