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5FYB

Crystal structure of the catalytic domain of human JARID1B in complex with MC1648

Functional Information from PDB Data
site_idAC1
Number of Residues4
DetailsBINDING SITE FOR RESIDUE ZN A 1754
ChainResidue
ACYS692
ACYS695
ACYS715
AHIS718

site_idAC2
Number of Residues4
DetailsBINDING SITE FOR RESIDUE ZN A 1755
ChainResidue
ACYS706
ACYS708
ACYS723
ACYS725

site_idAC3
Number of Residues5
DetailsBINDING SITE FOR RESIDUE MN A 1756
ChainResidue
AGLU501
AHIS587
A77J1761
AHOH2241
AHIS499

site_idAC4
Number of Residues1
DetailsBINDING SITE FOR RESIDUE MN A 1757
ChainResidue
AHOH2432

site_idAC5
Number of Residues2
DetailsBINDING SITE FOR RESIDUE MN A 1758
ChainResidue
AHIS399
AHIS399

site_idAC6
Number of Residues1
DetailsBINDING SITE FOR RESIDUE MN A 1759
ChainResidue
ASER544

site_idAC7
Number of Residues6
DetailsBINDING SITE FOR RESIDUE 77J A 1760
ChainResidue
AGLU31
ACYS32
APRO33
AVAL34
AILE55
AHOH2014

site_idAC8
Number of Residues16
DetailsBINDING SITE FOR RESIDUE 77J A 1761
ChainResidue
ATYR488
APHE496
AHIS499
AGLU501
ASER507
AASN509
ALYS517
ATRP519
AHIS587
AASN591
AMN1756
AEDO1770
ADMS1780
ADMS1781
AHOH2233
AHOH2241

site_idAC9
Number of Residues6
DetailsBINDING SITE FOR RESIDUE EDO A 1762
ChainResidue
APHE83
AGLY426
AALA427
ALEU487
AVAL489
AHOH2176

site_idBC1
Number of Residues6
DetailsBINDING SITE FOR RESIDUE EDO A 1763
ChainResidue
AARG666
ALEU732
ATYR734
ATHR737
AHOH2377
AHOH2460

site_idBC2
Number of Residues6
DetailsBINDING SITE FOR RESIDUE EDO A 1764
ChainResidue
AARG612
AASP630
AMET658
AGLU662
AEDO1776
AHOH2327

site_idBC3
Number of Residues3
DetailsBINDING SITE FOR RESIDUE EDO A 1765
ChainResidue
APRO30
AVAL568
ATYR569

site_idBC4
Number of Residues8
DetailsBINDING SITE FOR RESIDUE EDO A 1766
ChainResidue
AASP688
AGLU689
AARG690
AGLN691
AVAL693
AGLY711
ALEU712
ALEU713

site_idBC5
Number of Residues7
DetailsBINDING SITE FOR RESIDUE EDO A 1767
ChainResidue
AGLY524
ATYR525
AARG584
ALEU610
AHOH2270
AHOH2463
AHOH2464

site_idBC6
Number of Residues5
DetailsBINDING SITE FOR RESIDUE EDO A 1768
ChainResidue
AARG670
AVAL674
AILE675
AHOH2169
AHOH2376

site_idBC7
Number of Residues1
DetailsBINDING SITE FOR RESIDUE EDO A 1769
ChainResidue
AHIS564

site_idBC8
Number of Residues7
DetailsBINDING SITE FOR RESIDUE EDO A 1770
ChainResidue
AVAL99
ATRP486
ATYR488
A77J1761
ADMS1781
AHOH2119
AHOH2224

site_idBC9
Number of Residues7
DetailsBINDING SITE FOR RESIDUE EDO A 1771
ChainResidue
AASP387
AALA388
AVAL398
AHOH2129
AHOH2137
AHOH2137
AHOH2465

site_idCC1
Number of Residues5
DetailsBINDING SITE FOR RESIDUE EDO A 1772
ChainResidue
AHOH2005
ALEU405
ALYS408
AGLU409
AASP676

site_idCC2
Number of Residues4
DetailsBINDING SITE FOR RESIDUE EDO A 1773
ChainResidue
AGLU678
ALYS731
AARG733
AHOH2438

site_idCC3
Number of Residues3
DetailsBINDING SITE FOR RESIDUE EDO A 1774
ChainResidue
AMET680
AHOH2408
AHOH2466

site_idCC4
Number of Residues6
DetailsBINDING SITE FOR RESIDUE EDO A 1775
ChainResidue
APRO28
APRO29
APRO30
AMET562
ALEU750
AHOH2452

site_idCC5
Number of Residues6
DetailsBINDING SITE FOR RESIDUE EDO A 1776
ChainResidue
AVAL615
AARG619
ATHR697
AEDO1764
AHOH2325
AHOH2430

site_idCC6
Number of Residues5
DetailsBINDING SITE FOR RESIDUE EDO A 1777
ChainResidue
ALYS80
AGLU721
ACYS723
ASER724
AHOH2434

site_idCC7
Number of Residues3
DetailsBINDING SITE FOR RESIDUE DMS A 1778
ChainResidue
AGLU631
AGLU683
ATYR736

site_idCC8
Number of Residues9
DetailsBINDING SITE FOR RESIDUE DMS A 1779
ChainResidue
AILE500
ATRP504
AHIS617
ATYR618
ALEU621
AARG623
AHOH2245
AHOH2280
AHOH2340

site_idCC9
Number of Residues9
DetailsBINDING SITE FOR RESIDUE DMS A 1780
ChainResidue
AGLN88
AGLN96
ATHR97
ATYR425
ASER495
APHE496
ACYS497
A77J1761
AHOH2237

site_idDC1
Number of Residues7
DetailsBINDING SITE FOR RESIDUE DMS A 1781
ChainResidue
ATRP486
ATYR488
AGLU501
ASER507
AASN601
A77J1761
AEDO1770

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues52
DetailsZN_FING: C5HC2 => ECO:0000269|PubMed:26741168, ECO:0000269|PubMed:27214403, ECO:0000269|PubMed:28262558
ChainResidueDetails
ACYS692-MET744

site_idSWS_FT_FI2
Number of Residues4
DetailsBINDING: BINDING => ECO:0000250|UniProtKB:P29375
ChainResidueDetails
ATYR425
ASER507
AASN509
ALYS517

site_idSWS_FT_FI3
Number of Residues3
DetailsBINDING: BINDING => ECO:0000305|PubMed:26741168, ECO:0000305|PubMed:27214403, ECO:0000305|PubMed:28262558
ChainResidueDetails
AHIS499
AGLU501
AHIS587

site_idSWS_FT_FI4
Number of Residues2
DetailsCROSSLNK: Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in SUMO2) => ECO:0007744|PubMed:25755297, ECO:0007744|PubMed:28112733
ChainResidueDetails
ALYS769

218853

PDB entries from 2024-04-24

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