Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

5FUP

Crystal structure of human JARID1B in complex with 2-oxoglutarate.

Functional Information from PDB Data
site_idAC1
Number of Residues4
DetailsBINDING SITE FOR RESIDUE ZN A 1755
ChainResidue
ACYS692
ACYS695
ACYS715
AHIS718

site_idAC2
Number of Residues4
DetailsBINDING SITE FOR RESIDUE ZN A 1756
ChainResidue
ACYS706
ACYS708
ACYS723
ACYS725

site_idAC3
Number of Residues5
DetailsBINDING SITE FOR RESIDUE MN A 1757
ChainResidue
AGLU501
AHIS587
AAKG1764
AHOH2252
AHIS499

site_idAC4
Number of Residues1
DetailsBINDING SITE FOR RESIDUE MN A 1758
ChainResidue
AHOH2456

site_idAC5
Number of Residues16
DetailsBINDING SITE FOR RESIDUE EPE A 1759
ChainResidue
AILE500
ATRP504
ALEU541
ALEU552
AVAL553
ATYR586
AHIS617
ATYR618
ALEU621
AARG623
AHOH2250
AHOH2256
AHOH2289
AHOH2318
AHOH2360
AHOH2482

site_idAC6
Number of Residues6
DetailsBINDING SITE FOR RESIDUE CL A 1762
ChainResidue
ALEU90
AASN91
ALEU413
ATHR416
AGLU419
AHOH2111

site_idAC7
Number of Residues6
DetailsBINDING SITE FOR RESIDUE EDO A 2760
ChainResidue
AASP630
ACYS699
APHE700
AMET701
ASER702
AHOH2369

site_idAC8
Number of Residues3
DetailsBINDING SITE FOR RESIDUE EDO A 2762
ChainResidue
ATYR734
AHOH2468
AHOH2485

site_idAC9
Number of Residues6
DetailsBINDING SITE FOR RESIDUE EDO A 2763
ChainResidue
AARG612
AASP630
AMET658
AASP661
AGLU662
AHOH2455

site_idBC1
Number of Residues2
DetailsBINDING SITE FOR RESIDUE EDO A 2764
ChainResidue
APRO30
AVAL568

site_idBC2
Number of Residues9
DetailsBINDING SITE FOR RESIDUE EDO A 2765
ChainResidue
AASP688
AGLU689
AARG690
AGLN691
AVAL693
AGLY711
ALEU712
ALEU713
AHOH2488

site_idBC3
Number of Residues5
DetailsBINDING SITE FOR RESIDUE EDO A 2766
ChainResidue
AGLY524
ATYR525
AARG584
AHOH2277
AHOH2489

site_idBC4
Number of Residues5
DetailsBINDING SITE FOR RESIDUE EDO A 2767
ChainResidue
AARG670
AVAL674
AILE675
AHOH2179
AHOH2397

site_idBC5
Number of Residues4
DetailsBINDING SITE FOR RESIDUE EDO A 2768
ChainResidue
ATRP70
AGLU453
ASER457
AHOH2039

site_idBC6
Number of Residues8
DetailsBINDING SITE FOR RESIDUE EDO A 2769
ChainResidue
ATYR488
AGLU501
AALA599
AASN601
AAKG1764
AHOH2234
AHOH2252
AHOH2490

site_idBC7
Number of Residues15
DetailsBINDING SITE FOR RESIDUE AKG A 1764
ChainResidue
ATYR425
ATYR488
APHE496
AHIS499
AGLU501
ASER507
AASN509
ALYS517
ATRP519
AHIS587
AALA599
AMN1757
AHOH2252
AHOH2483
AEDO2769

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues52
DetailsZN_FING: C5HC2 => ECO:0000269|PubMed:26741168, ECO:0000269|PubMed:27214403, ECO:0000269|PubMed:28262558
ChainResidueDetails
ACYS692-MET744

site_idSWS_FT_FI2
Number of Residues4
DetailsBINDING: BINDING => ECO:0000250|UniProtKB:P29375
ChainResidueDetails
ATYR425
ASER507
AASN509
ALYS517

site_idSWS_FT_FI3
Number of Residues3
DetailsBINDING: BINDING => ECO:0000305|PubMed:26741168, ECO:0000305|PubMed:27214403, ECO:0000305|PubMed:28262558
ChainResidueDetails
AHIS499
AGLU501
AHIS587

site_idSWS_FT_FI4
Number of Residues2
DetailsCROSSLNK: Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in SUMO2) => ECO:0007744|PubMed:25755297, ECO:0007744|PubMed:28112733
ChainResidueDetails
ALYS769

222624

PDB entries from 2024-07-17

PDB statisticsPDBj update infoContact PDBjnumon