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5FP4

Crystal structure of human KDM4D in complex with 3-(4- phenylbutanamido)pyridine-4-carboxylic acid

Functional Information from PDB Data
site_idAC1
Number of Residues4
DetailsBINDING SITE FOR RESIDUE ZN A 350
ChainResidue
ACYS238
AHIS244
ACYS310
ACYS312

site_idAC2
Number of Residues6
DetailsBINDING SITE FOR RESIDUE FE2 A 360
ChainResidue
AHOH2317
AHIS192
AGLU194
AHIS280
AYC81344
AHOH2312

site_idAC3
Number of Residues8
DetailsBINDING SITE FOR RESIDUE GOL A 1341
ChainResidue
APHE21
AHIS22
AGLU27
ATYR34
ATYR37
AHOH2036
AHOH2044
AHOH2452

site_idAC4
Number of Residues5
DetailsBINDING SITE FOR RESIDUE GOL A 1342
ChainResidue
APHE31
ALYS150
ATRP152
AASN153
AHOH2062

site_idAC5
Number of Residues6
DetailsBINDING SITE FOR RESIDUE GOL A 1343
ChainResidue
APHE118
AARG263
AILE264
ATHR265
AHOH2398
AHOH2453

site_idAC6
Number of Residues15
DetailsBINDING SITE FOR RESIDUE YC8 A 1344
ChainResidue
ALEU75
AHIS90
ATYR136
AASP139
APHE189
AHIS192
AASN202
ALYS210
ATRP212
ALYS245
AHIS280
AFE2360
AHOH2165
AHOH2312
AHOH2317

site_idAC7
Number of Residues6
DetailsBINDING SITE FOR RESIDUE SO4 A 1345
ChainResidue
APRO113
ALYS124
AASN128
ATRP185
ALYS186
AHOH2247

site_idAC8
Number of Residues8
DetailsBINDING SITE FOR RESIDUE SO4 A 1346
ChainResidue
AARG60
AGLU61
ATHR62
AASN65
AHOH2133
AHOH2135
AHOH2146
AHOH2294

site_idAC9
Number of Residues4
DetailsBINDING SITE FOR RESIDUE SO4 A 1347
ChainResidue
AARG123
ALYS124
ALYS127
AASN128

site_idBC1
Number of Residues6
DetailsBINDING SITE FOR RESIDUE SO4 A 1348
ChainResidue
AARG102
AHIS103
AASN106
AHOH2201
AHOH2455
AHOH2456

site_idBC2
Number of Residues6
DetailsBINDING SITE FOR RESIDUE SO4 A 1349
ChainResidue
ATYR179
ATYR181
AALA292
AILE293
AASN294
AHOH2454

site_idBC3
Number of Residues4
DetailsBINDING SITE FOR RESIDUE SO4 A 1350
ChainResidue
AGLN116
AGLN116
AASN117
AASN117

site_idBC4
Number of Residues3
DetailsBINDING SITE FOR RESIDUE SO4 A 1351
ChainResidue
AASP302
ATYR303
AMET306

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues4
DetailsBINDING: BINDING => ECO:0000250|UniProtKB:B2RXH2
ChainResidueDetails
ATYR136
AASN202
ALYS210
ALYS245

site_idSWS_FT_FI2
Number of Residues3
DetailsBINDING: BINDING => ECO:0000255|PROSITE-ProRule:PRU00538, ECO:0000305|PubMed:26741168
ChainResidueDetails
AHIS192
AGLU194
AHIS280

site_idSWS_FT_FI3
Number of Residues4
DetailsBINDING: BINDING => ECO:0007744|PDB:5F5A, ECO:0007744|PDB:5F5C
ChainResidueDetails
ACYS238
AHIS244
ACYS310
ACYS312

site_idSWS_FT_FI4
Number of Residues2
DetailsMOD_RES: PolyADP-ribosyl glutamic acid => ECO:0000269|PubMed:23102699
ChainResidueDetails
AGLU26
AGLU27

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PDB entries from 2024-07-17

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