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5FP4

Crystal structure of human KDM4D in complex with 3-(4- phenylbutanamido)pyridine-4-carboxylic acid

Functional Information from PDB Data
site_idAC1
Number of Residues4
DetailsBINDING SITE FOR RESIDUE ZN A 350
ChainResidue
ACYS238
AHIS244
ACYS310
ACYS312

site_idAC2
Number of Residues6
DetailsBINDING SITE FOR RESIDUE FE2 A 360
ChainResidue
AHOH2317
AHIS192
AGLU194
AHIS280
AYC81344
AHOH2312

site_idAC3
Number of Residues8
DetailsBINDING SITE FOR RESIDUE GOL A 1341
ChainResidue
APHE21
AHIS22
AGLU27
ATYR34
ATYR37
AHOH2036
AHOH2044
AHOH2452

site_idAC4
Number of Residues5
DetailsBINDING SITE FOR RESIDUE GOL A 1342
ChainResidue
APHE31
ALYS150
ATRP152
AASN153
AHOH2062

site_idAC5
Number of Residues6
DetailsBINDING SITE FOR RESIDUE GOL A 1343
ChainResidue
APHE118
AARG263
AILE264
ATHR265
AHOH2398
AHOH2453

site_idAC6
Number of Residues15
DetailsBINDING SITE FOR RESIDUE YC8 A 1344
ChainResidue
ALEU75
AHIS90
ATYR136
AASP139
APHE189
AHIS192
AASN202
ALYS210
ATRP212
ALYS245
AHIS280
AFE2360
AHOH2165
AHOH2312
AHOH2317

site_idAC7
Number of Residues6
DetailsBINDING SITE FOR RESIDUE SO4 A 1345
ChainResidue
APRO113
ALYS124
AASN128
ATRP185
ALYS186
AHOH2247

site_idAC8
Number of Residues8
DetailsBINDING SITE FOR RESIDUE SO4 A 1346
ChainResidue
AARG60
AGLU61
ATHR62
AASN65
AHOH2133
AHOH2135
AHOH2146
AHOH2294

site_idAC9
Number of Residues4
DetailsBINDING SITE FOR RESIDUE SO4 A 1347
ChainResidue
AARG123
ALYS124
ALYS127
AASN128

site_idBC1
Number of Residues6
DetailsBINDING SITE FOR RESIDUE SO4 A 1348
ChainResidue
AARG102
AHIS103
AASN106
AHOH2201
AHOH2455
AHOH2456

site_idBC2
Number of Residues6
DetailsBINDING SITE FOR RESIDUE SO4 A 1349
ChainResidue
ATYR179
ATYR181
AALA292
AILE293
AASN294
AHOH2454

site_idBC3
Number of Residues4
DetailsBINDING SITE FOR RESIDUE SO4 A 1350
ChainResidue
AGLN116
AGLN116
AASN117
AASN117

site_idBC4
Number of Residues3
DetailsBINDING SITE FOR RESIDUE SO4 A 1351
ChainResidue
AASP302
ATYR303
AMET306

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues42
DetailsDomain: {"description":"JmjN","evidences":[{"source":"PROSITE-ProRule","id":"PRU00537","evidenceCode":"ECO:0000255"}]}
ChainResidueDetails

site_idSWS_FT_FI2
Number of Residues166
DetailsDomain: {"description":"JmjC","evidences":[{"source":"PROSITE-ProRule","id":"PRU00538","evidenceCode":"ECO:0000255"}]}
ChainResidueDetails

site_idSWS_FT_FI3
Number of Residues4
DetailsBinding site: {"evidences":[{"source":"UniProtKB","id":"B2RXH2","evidenceCode":"ECO:0000250"}]}
ChainResidueDetails

site_idSWS_FT_FI4
Number of Residues3
DetailsBinding site: {"evidences":[{"source":"PROSITE-ProRule","id":"PRU00538","evidenceCode":"ECO:0000255"},{"source":"PubMed","id":"26741168","evidenceCode":"ECO:0000305"}]}
ChainResidueDetails

site_idSWS_FT_FI5
Number of Residues4
DetailsBinding site: {"evidences":[{"source":"PDB","id":"5F5A","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"5F5C","evidenceCode":"ECO:0007744"}]}
ChainResidueDetails

site_idSWS_FT_FI6
Number of Residues2
DetailsModified residue: {"description":"PolyADP-ribosyl glutamic acid","evidences":[{"source":"PubMed","id":"23102699","evidenceCode":"ECO:0000269"}]}
ChainResidueDetails

243083

PDB entries from 2025-10-15

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