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5FAV

E491Q mutant of choline TMA-lyase

Functional Information from GO Data
ChainGOidnamespacecontents
A0003824molecular_functioncatalytic activity
A0005829cellular_componentcytosol
A0016829molecular_functionlyase activity
A0016840molecular_functioncarbon-nitrogen lyase activity
A0033265molecular_functioncholine binding
A0042426biological_processcholine catabolic process
A0042803molecular_functionprotein homodimerization activity
B0003824molecular_functioncatalytic activity
B0005829cellular_componentcytosol
B0016829molecular_functionlyase activity
B0016840molecular_functioncarbon-nitrogen lyase activity
B0033265molecular_functioncholine binding
B0042426biological_processcholine catabolic process
B0042803molecular_functionprotein homodimerization activity
Functional Information from PDB Data
site_idAC1
Number of Residues6
Detailsbinding site for residue NA A 901
ChainResidue
ASER746
AMET748
AHOH1321
AHOH1552
AHOH1750
BHOH1731

site_idAC2
Number of Residues7
Detailsbinding site for residue MLI A 902
ChainResidue
AHOH1049
AHOH1205
AHOH1565
AHOH1619
AARG572
ALEU689
AHOH1009

site_idAC3
Number of Residues6
Detailsbinding site for residue MLI A 903
ChainResidue
AARG238
ATHR633
AGLN636
AHOH1182
AHOH1186
AHOH1421

site_idAC4
Number of Residues6
Detailsbinding site for residue MLI A 904
ChainResidue
ALYS102
AARG105
ATYR106
AHOH1074
AHOH1342
AHOH1713

site_idAC5
Number of Residues9
Detailsbinding site for residue MLI A 905
ChainResidue
AGLY49
ASER50
AHIS51
AHOH1030
AHOH1048
AHOH1058
AHOH1091
AHOH1187
BLYS71

site_idAC6
Number of Residues7
Detailsbinding site for residue MLI A 906
ChainResidue
AHIS519
AASP535
ALEU536
AHOH1008
AHOH1038
AHOH1051
AHOH1121

site_idAC7
Number of Residues6
Detailsbinding site for residue NA A 907
ChainResidue
AGLU242
ALEU244
AHOH1011
AHOH1110
AHOH1614
AHOH1721

site_idAC8
Number of Residues6
Detailsbinding site for residue NA B 901
ChainResidue
AHOH1719
BSER746
BMET748
BHOH1448
BHOH1587
BHOH1668

site_idAC9
Number of Residues8
Detailsbinding site for residue MLI B 902
ChainResidue
BARG572
BLEU689
BHOH1015
BHOH1072
BHOH1170
BHOH1268
BHOH1504
BHOH1660

site_idAD1
Number of Residues7
Detailsbinding site for residue MLI B 903
ChainResidue
BARG405
BARG497
BHOH1040
BHOH1047
BHOH1057
BHOH1110
BHOH1688

site_idAD2
Number of Residues5
Detailsbinding site for residue MLI B 904
ChainResidue
BHIS519
BASP535
BLEU536
BSER537
BHOH1004

site_idAD3
Number of Residues6
Detailsbinding site for residue MLI B 905
ChainResidue
BSER50
BHIS51
BMET52
BGLY53
BHOH1081
BHOH1408

Functional Information from PROSITE/UniProt
site_idPS00850
Number of Residues9
DetailsGLY_RADICAL_1 Glycine radical domain signature. VvRVAGYSA
ChainResidueDetails
AVAL816-ALA824

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues2
DetailsACT_SITE: Cysteine radical intermediate => ECO:0000255|HAMAP-Rule:MF_02058, ECO:0000305|PubMed:23151509, ECO:0000305|PubMed:24854437
ChainResidueDetails
ACYS489
BCYS489

site_idSWS_FT_FI2
Number of Residues2
DetailsACT_SITE: Proton acceptor => ECO:0000255|HAMAP-Rule:MF_02058, ECO:0000305|PubMed:24854437
ChainResidueDetails
AGLN491
BGLN491

site_idSWS_FT_FI3
Number of Residues2
DetailsMOD_RES: Glycine radical => ECO:0000255|HAMAP-Rule:MF_02058, ECO:0000305|PubMed:23151509, ECO:0000305|PubMed:24854437
ChainResidueDetails
AGLY821
BGLY821

220113

PDB entries from 2024-05-22

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