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5EVD

Crystal structure of the metallo-beta-lactamase L1 in complex with the bisthiazolidine inhibitor D-VC26

Functional Information from GO Data
ChainGOidnamespacecontents
A0008270molecular_functionzinc ion binding
A0008800molecular_functionbeta-lactamase activity
A0016787molecular_functionhydrolase activity
A0017001biological_processantibiotic catabolic process
A0042597cellular_componentperiplasmic space
A0046677biological_processresponse to antibiotic
A0046872molecular_functionmetal ion binding
Functional Information from PDB Data
site_idAC1
Number of Residues14
Detailsbinding site for residue VC2 A 401
ChainResidue
AHIS116
AZN402
AZN403
AHOH511
AHOH538
AHOH633
AHIS118
AASP120
AHIS121
APHE156
AILE162
AHIS196
APRO227
AHIS263

site_idAC2
Number of Residues4
Detailsbinding site for residue ZN A 402
ChainResidue
AHIS116
AHIS118
AHIS196
AVC2401

site_idAC3
Number of Residues5
Detailsbinding site for residue ZN A 403
ChainResidue
AASP120
AHIS121
AHIS263
AVC2401
AHOH538

site_idAC4
Number of Residues5
Detailsbinding site for residue SO4 A 404
ChainResidue
AARG172
AVAL179
AILE180
ATHR181
AHOH537

site_idAC5
Number of Residues8
Detailsbinding site for residue SO4 A 405
ChainResidue
AARG252
AALA275
AARG276
AALA289
AGLY290
AALA291
ALYS297
AHOH517

Functional Information from PROSITE/UniProt
site_idPS00743
Number of Residues21
DetailsBETA_LACTAMASE_B_1 Beta-lactamases class B signature 1. LlSHaHADhaGPvaelkrrtG
ChainResidueDetails
ALEU113-GLY133

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues5
DetailsBINDING: BINDING => ECO:0000269|PubMed:17999929, ECO:0000269|PubMed:9811546
ChainResidueDetails
AHIS116
AHIS118
AASP120
AHIS121
AHIS196

site_idSWS_FT_FI2
Number of Residues1
DetailsBINDING: BINDING => ECO:0000250|UniProtKB:P25910
ChainResidueDetails
AASP220

site_idSWS_FT_FI3
Number of Residues1
DetailsBINDING: BINDING => ECO:0000269|PubMed:9811546
ChainResidueDetails
AHIS263

Catalytic Information from CSA
site_idMCSA1
Number of Residues7
DetailsM-CSA 258
ChainResidueDetails
AHIS116metal ligand
AHIS118metal ligand
AASP120metal ligand
AHIS121metal ligand
AHIS196metal ligand
ATYR229electrostatic stabiliser, hydrogen bond donor
AHIS263metal ligand

222415

PDB entries from 2024-07-10

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