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5EMG

Crystal structures of PNA p(GCTGCTGC)2 duplex containing T-T mismatches

Functional Information from PDB Data
site_idAC1
Number of Residues2
Detailsbinding site for residue CL A 101
ChainResidue
ATPN6
CGPN7

site_idAC2
Number of Residues2
Detailsbinding site for residue CL A 102
ChainResidue
ACPN2
DCPN5

site_idAC3
Number of Residues2
Detailsbinding site for residue CL A 103
ChainResidue
ACPN5
ATPN6

site_idAC4
Number of Residues6
Detailsbinding site for residue NA A 104
ChainResidue
BHOH233
DHOH208
DHOH214
ATPN3
AHOH224
BHOH221

site_idAC5
Number of Residues6
Detailsbinding site for residue NA A 105
ChainResidue
ATPN6
AGPN7
AHOH222
AHOH233
BTPN3
BHOH231

site_idAC6
Number of Residues2
Detailsbinding site for residue CL B 101
ChainResidue
BCPN5
CHOH247

site_idAC7
Number of Residues2
Detailsbinding site for residue CL B 102
ChainResidue
BGPN4
CCPN8

site_idAC8
Number of Residues6
Detailsbinding site for residue NA B 103
ChainResidue
ACPN8
BGPN1
BCPN2
BHOH215
BHOH222
CHOH220

site_idAC9
Number of Residues2
Detailsbinding site for residue CL C 101
ChainResidue
BGPN4
CGPN1

site_idAD1
Number of Residues6
Detailsbinding site for residue CL C 102
ChainResidue
AGPN7
AHOH218
BCPN2
BHOH214
CTPN6
CGPN7

site_idAD2
Number of Residues7
Detailsbinding site for residue CL C 103
ChainResidue
CCPN5
CTPN6
CHOH211
CHOH246
CHOH248
DGPN1
DCPN2

site_idAD3
Number of Residues4
Detailsbinding site for residue CL C 104
ChainResidue
BTPN6
BGPN7
CGPN4
CCPN5

site_idAD4
Number of Residues6
Detailsbinding site for residue NA C 105
ChainResidue
CTPN6
CGPN7
CHOH239
DCPN2
DTPN3
DHOH204

site_idAD5
Number of Residues7
Detailsbinding site for residue NA C 106
ChainResidue
BHOH208
BHOH216
CTPN3
CHOH231
CHOH244
DHOH201
DHOH239

site_idAD6
Number of Residues3
Detailsbinding site for residue CL D 101
ChainResidue
AGPN1
DGPN4
DHOH213

site_idAD7
Number of Residues4
Detailsbinding site for residue CL D 102
ChainResidue
AGPN4
ACPN5
DGPN7
DHOH242

site_idAD8
Number of Residues4
Detailsbinding site for residue CL D 103
ChainResidue
ACPN8
CTPN6
DGPN4
DHOH211

site_idAD9
Number of Residues5
Detailsbinding site for residue NA D 104
ChainResidue
DGPN1
DCPN2
DHOH203
DHOH220
DHOH223

site_idAE1
Number of Residues25
Detailsbinding site for residues GPN A 1 and CPN A 2
ChainResidue
DHOH213
DHOH217
ATPN3
ACL102
AHOH203
AHOH204
AHOH210
AHOH214
AHOH219
AHOH227
AHOH228
AHOH229
AHOH232
AHOH235
AHOH240
AHOH242
BGPN7
BCPN8
CCPN8
CHOH228
CHOH250
DGPN1
DCPN5
DTPN6
DCL101

site_idAE2
Number of Residues19
Detailsbinding site for residues CPN A 2 and TPN A 3
ChainResidue
AGPN1
AGPN4
ACL102
ANA104
AHOH204
AHOH210
AHOH213
AHOH224
AHOH227
AHOH228
AHOH229
AHOH231
BTPN6
BGPN7
BCPN8
BHOH221
DGPN4
DCPN5
DTPN6

site_idAE3
Number of Residues23
Detailsbinding site for residues TPN A 3 and GPN A 4
ChainResidue
ACPN2
ACPN5
ANA104
AHOH208
AHOH210
AHOH211
AHOH212
AHOH213
AHOH224
AHOH225
AHOH231
AHOH234
AHOH236
AHOH237
BCPN5
BTPN6
BGPN7
BHOH221
DGPN4
DCPN5
DTPN6
DCL102
DHOH246

site_idAE4
Number of Residues21
Detailsbinding site for residues GPN A 4 and CPN A 5
ChainResidue
ATPN3
ATPN6
ACL103
AHOH201
AHOH208
AHOH211
AHOH212
AHOH216
AHOH221
AHOH223
AHOH225
AHOH231
AHOH234
AHOH236
AHOH237
BGPN4
BCPN5
BTPN6
DTPN6
DCL102
DHOH246

site_idAE5
Number of Residues21
Detailsbinding site for residues CPN A 5 and TPN A 6
ChainResidue
AGPN4
AGPN7
ACL101
ACL103
ANA105
AHOH201
AHOH202
AHOH207
AHOH216
AHOH221
AHOH223
AHOH225
AHOH233
AHOH236
BTPN3
BGPN4
BCPN5
BHOH209
CCPN8
DCL102
DHOH246

site_idAE6
Number of Residues23
Detailsbinding site for residues TPN A 6 and GPN A 7
ChainResidue
ACPN5
ACPN8
ACL101
ACL103
ANA105
AHOH201
AHOH202
AHOH205
AHOH206
AHOH207
AHOH217
AHOH220
AHOH222
AHOH230
AHOH233
BCPN2
BTPN3
BGPN4
BHOH209
CCPN8
CCL102
DTPN3
DGPN4

site_idAE7
Number of Residues23
Detailsbinding site for residues GPN A 7 and CPN A 8
ChainResidue
ATPN6
ANA105
AHOH205
AHOH206
AHOH209
AHOH215
AHOH217
AHOH218
AHOH220
AHOH222
AHOH226
AHOH230
BGPN1
BCPN2
BTPN3
BNA103
CGPN1
CTPN6
CCL102
DTPN3
DGPN4
DCPN5
DCL103

site_idAE8
Number of Residues17
Detailsbinding site for residues GPN B 1 and CPN B 2
ChainResidue
AGPN7
ACPN8
AHOH258
BTPN3
BNA103
BNA103
BHOH202
BHOH214
BHOH215
BHOH220
BHOH222
BHOH223
BHOH230
CGPN1
CCL102
CHOH220
DCPN8

site_idAE9
Number of Residues21
Detailsbinding site for residues CPN B 2 and TPN B 3
ChainResidue
ATPN6
AGPN7
ACPN8
ANA105
AHOH233
AHOH258
BGPN1
BGPN4
BNA103
BHOH201
BHOH202
BHOH206
BHOH207
BHOH209
BHOH214
BHOH222
BHOH230
BHOH231
CGPN7
CCL102
CHOH229

site_idAF1
Number of Residues22
Detailsbinding site for residues TPN B 3 and GPN B 4
ChainResidue
ACPN5
ATPN6
AGPN7
ANA105
AHOH233
BCPN2
BCPN5
BCL102
BHOH201
BHOH206
BHOH207
BHOH209
BHOH214
BHOH216
BHOH219
BHOH231
CTPN3
CGPN7
CCL101
CHOH208
CHOH229
DHOH216

site_idAF2
Number of Residues19
Detailsbinding site for residues GPN B 4 and CPN B 5
ChainResidue
AGPN4
ACPN5
ATPN6
AHOH233
BTPN3
BTPN6
BCL101
BCL102
BHOH208
BHOH211
BHOH216
BHOH219
CCPN2
CTPN3
CGPN7
CCPN8
CCL101
CHOH208
DHOH216

site_idAF3
Number of Residues18
Detailsbinding site for residues CPN B 5 and TPN B 6
ChainResidue
ATPN3
AGPN4
ACPN5
AHOH231
BGPN4
BGPN7
BCL101
BHOH208
BHOH210
BHOH211
BHOH218
BHOH221
CCPN2
CTPN3
CGPN4
CCPN8
CCL104
CHOH208

site_idAF4
Number of Residues18
Detailsbinding site for residues TPN B 6 and GPN B 7
ChainResidue
ACPN2
ATPN3
AGPN4
AHOH231
BCPN5
BCPN8
BHOH203
BHOH204
BHOH205
BHOH210
BHOH211
BHOH217
BHOH218
BHOH221
CCPN2
CGPN4
CCL104
DHOH224

site_idAF5
Number of Residues18
Detailsbinding site for residues TPN B 6 and GPN B 7
ChainResidue
ACPN2
ATPN3
AGPN4
AHOH231
BCPN5
BCPN8
BHOH203
BHOH204
BHOH205
BHOH210
BHOH211
BHOH217
BHOH218
BHOH221
CCPN2
CGPN4
CCL104
DHOH224

site_idAF6
Number of Residues16
Detailsbinding site for residues GPN B 7 and CPN B 8
ChainResidue
AGPN1
ACPN2
ATPN3
BTPN6
BHOH203
BHOH204
BHOH205
BHOH210
BHOH212
BHOH213
BHOH217
BHOH224
CCL104
DGPN1
DHOH224
DHOH227

site_idAF7
Number of Residues21
Detailsbinding site for residues GPN C 1 and CPN C 2
ChainResidue
ACPN8
BGPN1
BCPN5
BTPN6
BHOH206
BHOH222
CTPN3
CCL101
CHOH203
CHOH206
CHOH212
CHOH215
CHOH218
CHOH220
CHOH224
CHOH225
CHOH227
CHOH233
CHOH234
DGPN7
DCPN8

site_idAF8
Number of Residues19
Detailsbinding site for residues CPN C 2 and TPN C 3
ChainResidue
BGPN4
BCPN5
BTPN6
BHOH208
CGPN1
CGPN4
CNA106
CHOH204
CHOH206
CHOH213
CHOH215
CHOH220
CHOH224
CHOH231
CHOH233
CHOH234
DTPN6
DGPN7
DCPN8

site_idAF9
Number of Residues24
Detailsbinding site for residues TPN C 3 and GPN C 4
ChainResidue
BGPN4
BCPN5
BTPN6
BHOH205
BHOH208
BHOH217
CCPN2
CCPN5
CCL104
CNA106
CHOH204
CHOH213
CHOH214
CHOH215
CHOH216
CHOH219
CHOH221
CHOH226
CHOH230
CHOH231
DCPN5
DTPN6
DGPN7
DHOH224

site_idAG1
Number of Residues22
Detailsbinding site for residues GPN C 4 and CPN C 5
ChainResidue
BTPN6
BHOH205
BHOH217
CTPN3
CTPN6
CCL103
CCL104
CHOH201
CHOH202
CHOH204
CHOH211
CHOH214
CHOH216
CHOH219
CHOH221
CHOH226
CHOH230
CHOH232
DGPN4
DCPN5
DTPN6
DHOH224

site_idAG2
Number of Residues21
Detailsbinding site for residues CPN C 5 and TPN C 6
ChainResidue
ACPN8
AHOH206
CGPN4
CGPN7
CCL102
CCL103
CCL104
CNA105
CHOH201
CHOH202
CHOH205
CHOH211
CHOH216
CHOH221
CHOH223
CHOH232
DTPN3
DGPN4
DCPN5
DCL103
DHOH204

site_idAG3
Number of Residues25
Detailsbinding site for residues TPN C 6 and GPN C 7
ChainResidue
ACPN8
ACL101
AHOH202
AHOH206
BTPN3
BGPN4
BHOH209
CCPN5
CCPN8
CCL102
CCL103
CNA105
CHOH201
CHOH205
CHOH208
CHOH209
CHOH210
CHOH222
CHOH223
CHOH229
DCPN2
DTPN3
DGPN4
DCL103
DHOH204

site_idAG4
Number of Residues26
Detailsbinding site for residues GPN C 7 and CPN C 8
ChainResidue
AGPN1
ATPN6
ACL101
AHOH202
AHOH214
AHOH232
BTPN3
BGPN4
BCPN5
BCL102
BHOH209
CTPN6
CCL102
CNA105
CHOH207
CHOH208
CHOH209
CHOH210
CHOH217
CHOH222
CHOH228
CHOH229
CHOH238
DGPN1
DCPN2
DTPN3

site_idAG5
Number of Residues26
Detailsbinding site for residues GPN C 7 and CPN C 8
ChainResidue
AGPN1
ATPN6
ACL101
AHOH202
AHOH214
AHOH232
BTPN3
BGPN4
BCPN5
BCL102
BHOH209
CTPN6
CCL102
CNA105
CHOH207
CHOH208
CHOH209
CHOH210
CHOH217
CHOH222
CHOH228
CHOH229
CHOH238
DGPN1
DCPN2
DTPN3

site_idAG6
Number of Residues19
Detailsbinding site for residues GPN D 1 and CPN D 2
ChainResidue
AGPN1
BCPN8
CGPN7
CCPN8
CCL103
CNA105
CHOH210
CHOH211
CHOH246
DTPN3
DNA104
DNA104
DHOH202
DHOH203
DHOH212
DHOH215
DHOH217
DHOH220
DHOH221

site_idAG7
Number of Residues16
Detailsbinding site for residues CPN D 2 and TPN D 3
ChainResidue
AGPN7
CTPN6
CGPN7
CCPN8
CCL103
CNA105
CHOH223
DGPN1
DGPN4
DNA104
DHOH202
DHOH204
DHOH213
DHOH217
DHOH218
DHOH220

site_idAG8
Number of Residues19
Detailsbinding site for residues TPN D 3 and GPN D 4
ChainResidue
ATPN3
AGPN7
AHOH220
AHOH249
BHOH204
CCPN5
CTPN6
CGPN7
CNA105
CHOH223
DCPN2
DCPN5
DCL101
DCL103
DHOH202
DHOH204
DHOH208
DHOH213
DHOH218

site_idAG9
Number of Residues20
Detailsbinding site for residues GPN D 4 and CPN D 5
ChainResidue
ACPN2
ATPN3
AGPN7
ACPN8
ACL102
AHOH220
AHOH249
BHOH204
CGPN4
CCPN5
CTPN6
DTPN3
DTPN6
DCL101
DCL103
DHOH204
DHOH208
DHOH210
DHOH211
DHOH214

site_idAH1
Number of Residues16
Detailsbinding site for residues CPN D 5 and TPN D 6
ChainResidue
ACPN2
ATPN3
AGPN4
ACPN8
ACL102
AHOH220
CTPN3
CGPN4
CCPN5
DGPN4
DGPN7
DHOH201
DHOH205
DHOH210
DHOH211
DHOH214

site_idAH2
Number of Residues15
Detailsbinding site for residues TPN D 6 and GPN D 7
ChainResidue
ACPN2
AGPN4
AHOH208
CCPN2
CTPN3
CGPN4
DCPN5
DCPN8
DCL102
DHOH201
DHOH205
DHOH206
DHOH211
DHOH216
DHOH225

site_idAH3
Number of Residues15
Detailsbinding site for residues TPN D 6 and GPN D 7
ChainResidue
ACPN2
AGPN4
AHOH208
CCPN2
CTPN3
CGPN4
DCPN5
DCPN8
DCL102
DHOH201
DHOH205
DHOH206
DHOH211
DHOH216
DHOH225

site_idAH4
Number of Residues14
Detailsbinding site for residues GPN D 7 and CPN D 8
ChainResidue
AHOH208
BGPN1
CGPN1
CCPN2
CTPN3
DTPN6
DCL102
DHOH206
DHOH207
DHOH209
DHOH216
DHOH219
DHOH225
DHOH245

222624

PDB entries from 2024-07-17

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