5EJ4
EcMenD-ThDP-Mn2+ complex soaked with 2-ketoglutarate for 15 min
Functional Information from GO Data
Chain | GOid | namespace | contents |
A | 0000287 | molecular_function | magnesium ion binding |
A | 0003824 | molecular_function | catalytic activity |
A | 0009234 | biological_process | menaquinone biosynthetic process |
A | 0016740 | molecular_function | transferase activity |
A | 0030145 | molecular_function | manganese ion binding |
A | 0030976 | molecular_function | thiamine pyrophosphate binding |
A | 0042803 | molecular_function | protein homodimerization activity |
A | 0046872 | molecular_function | metal ion binding |
A | 0070204 | molecular_function | 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase activity |
B | 0000287 | molecular_function | magnesium ion binding |
B | 0003824 | molecular_function | catalytic activity |
B | 0009234 | biological_process | menaquinone biosynthetic process |
B | 0016740 | molecular_function | transferase activity |
B | 0030145 | molecular_function | manganese ion binding |
B | 0030976 | molecular_function | thiamine pyrophosphate binding |
B | 0042803 | molecular_function | protein homodimerization activity |
B | 0046872 | molecular_function | metal ion binding |
B | 0070204 | molecular_function | 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase activity |
C | 0000287 | molecular_function | magnesium ion binding |
C | 0003824 | molecular_function | catalytic activity |
C | 0009234 | biological_process | menaquinone biosynthetic process |
C | 0016740 | molecular_function | transferase activity |
C | 0030145 | molecular_function | manganese ion binding |
C | 0030976 | molecular_function | thiamine pyrophosphate binding |
C | 0042803 | molecular_function | protein homodimerization activity |
C | 0046872 | molecular_function | metal ion binding |
C | 0070204 | molecular_function | 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase activity |
D | 0000287 | molecular_function | magnesium ion binding |
D | 0003824 | molecular_function | catalytic activity |
D | 0009234 | biological_process | menaquinone biosynthetic process |
D | 0016740 | molecular_function | transferase activity |
D | 0030145 | molecular_function | manganese ion binding |
D | 0030976 | molecular_function | thiamine pyrophosphate binding |
D | 0042803 | molecular_function | protein homodimerization activity |
D | 0046872 | molecular_function | metal ion binding |
D | 0070204 | molecular_function | 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase activity |
E | 0000287 | molecular_function | magnesium ion binding |
E | 0003824 | molecular_function | catalytic activity |
E | 0009234 | biological_process | menaquinone biosynthetic process |
E | 0016740 | molecular_function | transferase activity |
E | 0030145 | molecular_function | manganese ion binding |
E | 0030976 | molecular_function | thiamine pyrophosphate binding |
E | 0042803 | molecular_function | protein homodimerization activity |
E | 0046872 | molecular_function | metal ion binding |
E | 0070204 | molecular_function | 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase activity |
F | 0000287 | molecular_function | magnesium ion binding |
F | 0003824 | molecular_function | catalytic activity |
F | 0009234 | biological_process | menaquinone biosynthetic process |
F | 0016740 | molecular_function | transferase activity |
F | 0030145 | molecular_function | manganese ion binding |
F | 0030976 | molecular_function | thiamine pyrophosphate binding |
F | 0042803 | molecular_function | protein homodimerization activity |
F | 0046872 | molecular_function | metal ion binding |
F | 0070204 | molecular_function | 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase activity |
G | 0000287 | molecular_function | magnesium ion binding |
G | 0003824 | molecular_function | catalytic activity |
G | 0009234 | biological_process | menaquinone biosynthetic process |
G | 0016740 | molecular_function | transferase activity |
G | 0030145 | molecular_function | manganese ion binding |
G | 0030976 | molecular_function | thiamine pyrophosphate binding |
G | 0042803 | molecular_function | protein homodimerization activity |
G | 0046872 | molecular_function | metal ion binding |
G | 0070204 | molecular_function | 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase activity |
H | 0000287 | molecular_function | magnesium ion binding |
H | 0003824 | molecular_function | catalytic activity |
H | 0009234 | biological_process | menaquinone biosynthetic process |
H | 0016740 | molecular_function | transferase activity |
H | 0030145 | molecular_function | manganese ion binding |
H | 0030976 | molecular_function | thiamine pyrophosphate binding |
H | 0042803 | molecular_function | protein homodimerization activity |
H | 0046872 | molecular_function | metal ion binding |
H | 0070204 | molecular_function | 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase activity |
Functional Information from PDB Data
site_id | AC1 |
Number of Residues | 30 |
Details | binding site for residue TD6 A 601 |
Chain | Residue |
A | ASN390 |
A | GLY441 |
A | ASP442 |
A | LEU443 |
A | SER444 |
A | TYR447 |
A | ASN469 |
A | GLY471 |
A | GLY472 |
A | GLN473 |
A | ILE474 |
A | SER391 |
A | MN602 |
A | HOH854 |
A | HOH877 |
A | HOH988 |
B | PRO30 |
B | GLU55 |
B | THR81 |
B | ALA82 |
B | ASN117 |
B | GLN118 |
A | LEU392 |
B | FMT601 |
A | ARG395 |
A | ARG413 |
A | SER416 |
A | GLY417 |
A | ILE418 |
A | ASP419 |
site_id | AC2 |
Number of Residues | 5 |
Details | binding site for residue MN A 602 |
Chain | Residue |
A | ASP442 |
A | ASN469 |
A | GLY471 |
A | TD6601 |
A | HOH877 |
site_id | AC3 |
Number of Residues | 9 |
Details | binding site for residue GOL A 603 |
Chain | Residue |
A | HIS49 |
A | HIS50 |
A | THR51 |
A | ARG430 |
A | LEU454 |
A | GLN457 |
A | HOH801 |
A | HOH807 |
A | HOH939 |
site_id | AC4 |
Number of Residues | 5 |
Details | binding site for residue GOL A 604 |
Chain | Residue |
A | ARG364 |
A | HIS374 |
A | ARG375 |
A | CYS377 |
A | ASP378 |
site_id | AC5 |
Number of Residues | 8 |
Details | binding site for residue FMT A 605 |
Chain | Residue |
A | GLY31 |
A | SER32 |
A | ARG33 |
A | THR78 |
A | ARG107 |
A | GLN118 |
A | HOH874 |
B | TD6602 |
site_id | AC6 |
Number of Residues | 8 |
Details | binding site for residue FMT B 601 |
Chain | Residue |
A | TD6601 |
B | GLY31 |
B | SER32 |
B | ARG33 |
B | THR78 |
B | ARG107 |
B | GLN118 |
B | HOH710 |
site_id | AC7 |
Number of Residues | 30 |
Details | binding site for residue TD6 B 602 |
Chain | Residue |
A | PRO30 |
A | GLU55 |
A | THR81 |
A | ALA82 |
A | ASN117 |
A | GLN118 |
A | FMT605 |
B | ASN390 |
B | SER391 |
B | LEU392 |
B | ARG395 |
B | ARG413 |
B | SER416 |
B | GLY417 |
B | ILE418 |
B | ASP419 |
B | GLY441 |
B | ASP442 |
B | LEU443 |
B | SER444 |
B | TYR447 |
B | ASN469 |
B | GLY471 |
B | GLY472 |
B | GLN473 |
B | ILE474 |
B | MN603 |
B | HOH748 |
B | HOH803 |
B | HOH946 |
site_id | AC8 |
Number of Residues | 5 |
Details | binding site for residue MN B 603 |
Chain | Residue |
B | HOH748 |
B | ASP442 |
B | ASN469 |
B | GLY471 |
B | TD6602 |
site_id | AC9 |
Number of Residues | 8 |
Details | binding site for residue GOL B 604 |
Chain | Residue |
B | HIS49 |
B | HIS50 |
B | THR51 |
B | ARG430 |
B | LEU454 |
B | GLN457 |
B | HOH772 |
B | HOH861 |
site_id | AD1 |
Number of Residues | 6 |
Details | binding site for residue GOL B 605 |
Chain | Residue |
A | HOH701 |
B | ILE361 |
B | ARG364 |
B | HIS374 |
B | ASP378 |
B | HOH1004 |
site_id | AD2 |
Number of Residues | 29 |
Details | binding site for residue TD6 C 601 |
Chain | Residue |
C | ASN390 |
C | SER391 |
C | LEU392 |
C | ARG395 |
C | ARG413 |
C | SER416 |
C | GLY417 |
C | ILE418 |
C | ASP419 |
C | GLY441 |
C | ASP442 |
C | LEU443 |
C | SER444 |
C | TYR447 |
C | ASN469 |
C | GLY471 |
C | GLY472 |
C | GLN473 |
C | ILE474 |
C | MN602 |
C | HOH783 |
C | HOH864 |
C | HOH991 |
D | PRO30 |
D | GLU55 |
D | THR81 |
D | ASN117 |
D | GLN118 |
D | FMT601 |
site_id | AD3 |
Number of Residues | 5 |
Details | binding site for residue MN C 602 |
Chain | Residue |
C | ASP442 |
C | ASN469 |
C | GLY471 |
C | TD6601 |
C | HOH783 |
site_id | AD4 |
Number of Residues | 9 |
Details | binding site for residue GOL C 603 |
Chain | Residue |
C | HIS49 |
C | HIS50 |
C | THR51 |
C | ARG430 |
C | LEU454 |
C | GLN457 |
C | HOH769 |
C | HOH922 |
C | HOH926 |
site_id | AD5 |
Number of Residues | 5 |
Details | binding site for residue GOL C 604 |
Chain | Residue |
C | ARG364 |
C | HIS374 |
C | ARG375 |
C | ASP378 |
C | HOH867 |
site_id | AD6 |
Number of Residues | 7 |
Details | binding site for residue FMT C 605 |
Chain | Residue |
C | SER32 |
C | ARG33 |
C | THR78 |
C | ARG107 |
C | GLN118 |
C | HOH880 |
D | TD6602 |
site_id | AD7 |
Number of Residues | 7 |
Details | binding site for residue FMT D 601 |
Chain | Residue |
C | TD6601 |
D | SER32 |
D | ARG33 |
D | THR78 |
D | ARG107 |
D | GLN118 |
D | HOH974 |
site_id | AD8 |
Number of Residues | 30 |
Details | binding site for residue TD6 D 602 |
Chain | Residue |
C | PRO30 |
C | GLU55 |
C | THR81 |
C | ALA82 |
C | ASN117 |
C | GLN118 |
C | FMT605 |
D | ASN390 |
D | SER391 |
D | LEU392 |
D | ARG395 |
D | ARG413 |
D | SER416 |
D | GLY417 |
D | ILE418 |
D | ASP419 |
D | GLY441 |
D | ASP442 |
D | LEU443 |
D | SER444 |
D | TYR447 |
D | ASN469 |
D | GLY471 |
D | GLY472 |
D | GLN473 |
D | ILE474 |
D | MN603 |
D | HOH866 |
D | HOH875 |
D | HOH988 |
site_id | AD9 |
Number of Residues | 5 |
Details | binding site for residue MN D 603 |
Chain | Residue |
D | ASP442 |
D | ASN469 |
D | GLY471 |
D | TD6602 |
D | HOH866 |
site_id | AE1 |
Number of Residues | 8 |
Details | binding site for residue GOL D 604 |
Chain | Residue |
D | HIS49 |
D | HIS50 |
D | THR51 |
D | ARG430 |
D | LEU454 |
D | GLN457 |
D | HOH722 |
D | HOH908 |
site_id | AE2 |
Number of Residues | 5 |
Details | binding site for residue GOL D 605 |
Chain | Residue |
D | ARG364 |
D | HIS374 |
D | CYS377 |
D | ASP378 |
D | HOH718 |
site_id | AE3 |
Number of Residues | 30 |
Details | binding site for residue TD6 E 601 |
Chain | Residue |
E | ASN390 |
E | SER391 |
E | LEU392 |
E | ARG395 |
E | ARG413 |
E | SER416 |
E | GLY417 |
E | ILE418 |
E | ASP419 |
E | GLY441 |
E | ASP442 |
E | LEU443 |
E | SER444 |
E | TYR447 |
E | ASN469 |
E | GLY471 |
E | GLY472 |
E | GLN473 |
E | ILE474 |
E | MN602 |
E | HOH827 |
E | HOH919 |
E | HOH933 |
F | PRO30 |
F | GLU55 |
F | THR81 |
F | ALA82 |
F | ASN117 |
F | GLN118 |
F | FMT601 |
site_id | AE4 |
Number of Residues | 5 |
Details | binding site for residue MN E 602 |
Chain | Residue |
E | ASP442 |
E | ASN469 |
E | GLY471 |
E | TD6601 |
E | HOH827 |
site_id | AE5 |
Number of Residues | 9 |
Details | binding site for residue GOL E 603 |
Chain | Residue |
E | HIS49 |
E | HIS50 |
E | THR51 |
E | ARG430 |
E | LEU454 |
E | GLN457 |
E | HOH723 |
E | HOH805 |
E | HOH873 |
site_id | AE6 |
Number of Residues | 4 |
Details | binding site for residue GOL E 604 |
Chain | Residue |
E | ARG364 |
E | HIS374 |
E | ASP378 |
E | HOH1035 |
site_id | AE7 |
Number of Residues | 9 |
Details | binding site for residue FMT E 605 |
Chain | Residue |
E | GLY31 |
E | SER32 |
E | ARG33 |
E | THR78 |
E | ARG107 |
E | GLN118 |
E | HOH817 |
E | HOH937 |
F | TD6602 |
site_id | AE8 |
Number of Residues | 8 |
Details | binding site for residue FMT F 601 |
Chain | Residue |
E | TD6601 |
F | SER32 |
F | ARG33 |
F | THR78 |
F | ARG107 |
F | GLN118 |
F | HOH832 |
F | HOH863 |
site_id | AE9 |
Number of Residues | 30 |
Details | binding site for residue TD6 F 602 |
Chain | Residue |
E | PRO30 |
E | GLU55 |
E | THR81 |
E | ALA82 |
E | ASN117 |
E | GLN118 |
E | FMT605 |
F | ASN390 |
F | SER391 |
F | LEU392 |
F | ARG395 |
F | ARG413 |
F | SER416 |
F | GLY417 |
F | ILE418 |
F | ASP419 |
F | GLY441 |
F | ASP442 |
F | LEU443 |
F | SER444 |
F | TYR447 |
F | ASN469 |
F | GLY471 |
F | GLY472 |
F | GLN473 |
F | ILE474 |
F | MN603 |
F | HOH779 |
F | HOH791 |
F | HOH966 |
site_id | AF1 |
Number of Residues | 5 |
Details | binding site for residue MN F 603 |
Chain | Residue |
F | ASP442 |
F | ASN469 |
F | GLY471 |
F | TD6602 |
F | HOH791 |
site_id | AF2 |
Number of Residues | 9 |
Details | binding site for residue GOL F 604 |
Chain | Residue |
F | HIS49 |
F | HIS50 |
F | THR51 |
F | ARG430 |
F | LEU454 |
F | GLN457 |
F | HOH834 |
F | HOH848 |
F | HOH976 |
site_id | AF3 |
Number of Residues | 5 |
Details | binding site for residue GOL F 605 |
Chain | Residue |
F | ARG364 |
F | HIS374 |
F | ARG375 |
F | CYS377 |
F | ASP378 |
site_id | AF4 |
Number of Residues | 31 |
Details | binding site for residue TD6 G 601 |
Chain | Residue |
G | ASN390 |
G | SER391 |
G | LEU392 |
G | ARG395 |
G | ARG413 |
G | SER416 |
G | GLY417 |
G | ILE418 |
G | ASP419 |
G | GLY441 |
G | ASP442 |
G | LEU443 |
G | SER444 |
G | TYR447 |
G | ASN469 |
G | GLY471 |
G | GLY472 |
G | GLN473 |
G | ILE474 |
G | MN602 |
G | HOH801 |
G | HOH919 |
G | HOH1029 |
G | HOH1031 |
H | PRO30 |
H | GLU55 |
H | THR81 |
H | ALA82 |
H | ASN117 |
H | GLN118 |
H | FMT601 |
site_id | AF5 |
Number of Residues | 5 |
Details | binding site for residue MN G 602 |
Chain | Residue |
G | ASP442 |
G | ASN469 |
G | GLY471 |
G | TD6601 |
G | HOH919 |
site_id | AF6 |
Number of Residues | 9 |
Details | binding site for residue GOL G 603 |
Chain | Residue |
G | HIS49 |
G | HIS50 |
G | THR51 |
G | ARG430 |
G | LEU454 |
G | GLN457 |
G | HOH734 |
G | HOH811 |
G | HOH912 |
site_id | AF7 |
Number of Residues | 4 |
Details | binding site for residue GOL G 604 |
Chain | Residue |
G | ARG364 |
G | HIS374 |
G | ARG375 |
G | ASP378 |
site_id | AF8 |
Number of Residues | 9 |
Details | binding site for residue FMT G 605 |
Chain | Residue |
G | GLY31 |
G | SER32 |
G | ARG33 |
G | THR78 |
G | ARG107 |
G | GLN118 |
G | HOH755 |
G | HOH988 |
H | TD6602 |
site_id | AF9 |
Number of Residues | 9 |
Details | binding site for residue FMT H 601 |
Chain | Residue |
G | TD6601 |
G | HOH1029 |
H | GLY31 |
H | SER32 |
H | ARG33 |
H | THR78 |
H | ARG107 |
H | GLN118 |
H | HOH891 |
site_id | AG1 |
Number of Residues | 30 |
Details | binding site for residue TD6 H 602 |
Chain | Residue |
G | PRO30 |
G | GLU55 |
G | THR81 |
G | ALA82 |
G | ASN117 |
G | GLN118 |
G | FMT605 |
H | ASN390 |
H | SER391 |
H | LEU392 |
H | ARG395 |
H | ARG413 |
H | SER416 |
H | GLY417 |
H | ILE418 |
H | ASP419 |
H | GLY441 |
H | ASP442 |
H | LEU443 |
H | SER444 |
H | TYR447 |
H | ASN469 |
H | GLY471 |
H | GLY472 |
H | GLN473 |
H | ILE474 |
H | MN603 |
H | HOH816 |
H | HOH884 |
H | HOH955 |
site_id | AG2 |
Number of Residues | 5 |
Details | binding site for residue MN H 603 |
Chain | Residue |
H | ASP442 |
H | ASN469 |
H | GLY471 |
H | TD6602 |
H | HOH816 |
site_id | AG3 |
Number of Residues | 7 |
Details | binding site for residue GOL H 604 |
Chain | Residue |
G | HOH928 |
H | HIS50 |
H | THR51 |
H | ARG430 |
H | LEU454 |
H | HOH741 |
H | HOH754 |
site_id | AG4 |
Number of Residues | 5 |
Details | binding site for residue GOL H 605 |
Chain | Residue |
G | HOH1092 |
H | ARG364 |
H | HIS374 |
H | ASP378 |
H | HOH807 |