Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

5EEI

Crystal structure of Danio rerio histone deacetylase 6 catalytic domain 2 in complex with SAHA

Functional Information from GO Data
ChainGOidnamespacecontents
A0000118cellular_componenthistone deacetylase complex
A0004407molecular_functionhistone deacetylase activity
A0006325biological_processchromatin organization
A0016575biological_processhistone deacetylation
B0000118cellular_componenthistone deacetylase complex
B0004407molecular_functionhistone deacetylase activity
B0006325biological_processchromatin organization
B0016575biological_processhistone deacetylation
Functional Information from PDB Data
site_idAC1
Number of Residues4
Detailsbinding site for residue ZN A 2001
ChainResidue
AASP612
AHIS614
AASP705
ASHH2004

site_idAC2
Number of Residues5
Detailsbinding site for residue K A 2002
ChainResidue
AASP610
AASP612
AHIS614
ASER633
ALEU634

site_idAC3
Number of Residues6
Detailsbinding site for residue K A 2003
ChainResidue
APHE623
AASP626
AVAL629
ATYR662
AHOH2239
AHOH2244

site_idAC4
Number of Residues16
Detailsbinding site for residue SHH A 2004
ChainResidue
APRO464
ASER531
AHIS573
AHIS574
APHE583
AASP612
AHIS614
APHE643
AASP705
ALEU712
ATYR745
AZN2001
AGOL2005
AGOL2006
AHOH2229
AHOH2284

site_idAC5
Number of Residues2
Detailsbinding site for residue GOL A 2005
ChainResidue
ASHH2004
AHOH2115

site_idAC6
Number of Residues8
Detailsbinding site for residue GOL A 2006
ChainResidue
AALA641
APHE642
APHE643
AASN645
ASHH2004
AHOH2108
AHOH2227
AHOH2284

site_idAC7
Number of Residues1
Detailsbinding site for residue EDO A 2007
ChainResidue
AASN784

site_idAC8
Number of Residues3
Detailsbinding site for residue CL A 2008
ChainResidue
AARG481
ALEU483
ASER484

site_idAC9
Number of Residues3
Detailsbinding site for residue CL A 2009
ChainResidue
AASN785
AARG788
AHOH2277

site_idAD1
Number of Residues3
Detailsbinding site for residue MG A 2010
ChainResidue
ATYR662
APHE793
ATRP794

site_idAD2
Number of Residues2
Detailsbinding site for residue CL A 2011
ChainResidue
AARG476
BEDO809

site_idAD3
Number of Residues14
Detailsbinding site for residue SHH B 801
ChainResidue
BPRO464
BSER531
BHIS573
BHIS574
BPHE583
BASP612
BHIS614
BPHE643
BASP705
BLEU712
BTYR745
BZN802
BHOH953
BHOH1072

site_idAD4
Number of Residues4
Detailsbinding site for residue ZN B 802
ChainResidue
BASP612
BHIS614
BASP705
BSHH801

site_idAD5
Number of Residues5
Detailsbinding site for residue K B 803
ChainResidue
BASP610
BASP612
BHIS614
BSER633
BLEU634

site_idAD6
Number of Residues6
Detailsbinding site for residue K B 804
ChainResidue
BPHE623
BASP626
BVAL629
BTYR662
BHOH967
BHOH1024

site_idAD7
Number of Residues3
Detailsbinding site for residue GOL B 805
ChainResidue
BARG601
BARG605
BGLU696

site_idAD8
Number of Residues4
Detailsbinding site for residue GOL B 806
ChainResidue
AASN746
ASER749
BARG476
BGLU479

site_idAD9
Number of Residues1
Detailsbinding site for residue CL B 807
ChainResidue
BCL808

site_idAE1
Number of Residues2
Detailsbinding site for residue CL B 808
ChainResidue
BARG601
BCL807

site_idAE2
Number of Residues6
Detailsbinding site for residue EDO B 809
ChainResidue
AARG476
AGLU479
ACL2011
BGLY709
BASN746
BSER749

221051

PDB entries from 2024-06-12

PDB statisticsPDBj update infoContact PDBjnumon