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5EEF

Crystal structure of Danio rerio histone deacetylase 6 catalytic domain 1 in complex with trichostatin A

Functional Information from GO Data
ChainGOidnamespacecontents
A0000118cellular_componenthistone deacetylase complex
A0004407molecular_functionhistone deacetylase activity
A0006325biological_processchromatin organization
A0016575biological_processhistone deacetylation
B0000118cellular_componenthistone deacetylase complex
B0004407molecular_functionhistone deacetylase activity
B0006325biological_processchromatin organization
B0016575biological_processhistone deacetylation
Functional Information from PDB Data
site_idAC1
Number of Residues4
Detailsbinding site for residue ZN A 2001
ChainResidue
AASP230
AHIS232
AASP323
ATSN2002

site_idAC2
Number of Residues11
Detailsbinding site for residue TSN A 2002
ChainResidue
AHIS232
ATRP261
AASP323
ALYS330
ATYR363
AZN2001
ASER150
AHIS192
AHIS193
APHE202
AASP230

site_idAC3
Number of Residues5
Detailsbinding site for residue NH4 A 2003
ChainResidue
AASP228
AASP230
AHIS232
ASER251
AVAL252

site_idAC4
Number of Residues6
Detailsbinding site for residue NH4 A 2004
ChainResidue
APHE241
AASP244
AVAL247
ATYR280
AHOH2119
AHOH2138

site_idAC5
Number of Residues9
Detailsbinding site for residue SO4 A 2005
ChainResidue
AARG181
AHIS345
ALYS348
AGLY381
AHOH2111
AHOH2158
BHIS345
BLYS348
BGLY381

site_idAC6
Number of Residues6
Detailsbinding site for residue EDO A 2006
ChainResidue
ATHR61
AGLY62
ATHR63
ALEU379
ALEU380
AHOH2116

site_idAC7
Number of Residues4
Detailsbinding site for residue ZN B 2001
ChainResidue
BASP230
BHIS232
BASP323
BTSN2002

site_idAC8
Number of Residues11
Detailsbinding site for residue TSN B 2002
ChainResidue
BSER150
BHIS192
BHIS193
BPHE202
BASP230
BHIS232
BTRP261
BASP323
BLYS330
BTYR363
BZN2001

site_idAC9
Number of Residues6
Detailsbinding site for residue NH4 B 2003
ChainResidue
BASP228
BASP230
BHIS232
BSER251
BVAL252
BHIS253

site_idAD1
Number of Residues5
Detailsbinding site for residue NH4 B 2004
ChainResidue
BPHE241
BASP244
BVAL247
BTYR280
BHOH2114

site_idAD2
Number of Residues4
Detailsbinding site for residue EDO B 2005
ChainResidue
AHIS386
BGLN314
BGLN352
BARG354

221051

PDB entries from 2024-06-12

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