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5E41

Crystal structure of the large fragment of DNA Polymerase I from Thermus aquaticus in a closed ternary complex with 5-(N-(10-hydroxydecanoyl)-aminopentenyl)-2'-deoxyuridine-triphosphate

Functional Information from GO Data
ChainGOidnamespacecontents
A0001882molecular_functionnucleoside binding
A0003676molecular_functionnucleic acid binding
A0003677molecular_functionDNA binding
A0003887molecular_functionDNA-directed DNA polymerase activity
A0006260biological_processDNA replication
A0006261biological_processDNA-templated DNA replication
A0006281biological_processDNA repair
Functional Information from PDB Data
site_idAC1
Number of Residues7
Detailsbinding site for residue MG A 901
ChainResidue
AASP610
AASP785
AMG902
AAUL903
AHOH1054
AHOH1108
BDOC112

site_idAC2
Number of Residues5
Detailsbinding site for residue MG A 902
ChainResidue
AASP785
AMG901
AAUL903
AASP610
ATYR611

site_idAC3
Number of Residues24
Detailsbinding site for residue AUL A 903
ChainResidue
AARG573
AARG587
AASP610
ATYR611
ASER612
AGLN613
AILE614
AGLU615
AHIS639
AARG659
AARG660
ALYS663
ATHR664
APHE667
AASP785
AMG901
AMG902
AHOH1054
AHOH1058
AHOH1077
AHOH1115
BDOC112
CDA204
CDG205

site_idAC4
Number of Residues8
Detailsbinding site for residue GOL A 904
ChainResidue
ATHR544
APRO579
AASN580
AASN583
AHOH1001
CDC209
CDC210
CHOH423

site_idAC5
Number of Residues4
Detailsbinding site for residue GOL A 905
ChainResidue
AGLU462
AARG593
AGLU825
AHOH1050

site_idAC6
Number of Residues5
Detailsbinding site for residue GOL A 906
ChainResidue
ALYS767
ATYR811
AHOH1030
AHOH1056
AHOH1082

site_idAC7
Number of Residues3
Detailsbinding site for residue GOL C 301
ChainResidue
AARG728
CDG206
CDC207

Functional Information from PROSITE/UniProt
site_idPS00447
Number of Residues20
DetailsDNA_POLYMERASE_A DNA polymerase family A signature. RraAKtinFGvlYgmSahrL
ChainResidueDetails
AARG659-LEU678

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PDB entries from 2024-10-09

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