Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

5E2F

Crystal Structure of Beta-lactamase class D from Bacillus subtilis

Functional Information from GO Data
ChainGOidnamespacecontents
A0008658molecular_functionpenicillin binding
A0008800molecular_functionbeta-lactamase activity
A0017001biological_processantibiotic catabolic process
B0008658molecular_functionpenicillin binding
B0008800molecular_functionbeta-lactamase activity
B0017001biological_processantibiotic catabolic process
Functional Information from PDB Data
site_idAC1
Number of Residues6
Detailsbinding site for residue CA A 301
ChainResidue
AASP41
AGLU42
AASP135
AHOH462
AHOH508
AHOH616

site_idAC2
Number of Residues4
Detailsbinding site for residue CA A 302
ChainResidue
AHOH599
AASP45
AHOH451
AHOH581

site_idAC3
Number of Residues5
Detailsbinding site for residue EDO A 303
ChainResidue
ASER124
ATHR215
AGLY216
ATHR217
AHOH403

site_idAC4
Number of Residues5
Detailsbinding site for residue EDO A 304
ChainResidue
AARG71
AGLY151
AHOH432
BARG71
BHOH496

site_idAC5
Number of Residues6
Detailsbinding site for residue CA B 300
ChainResidue
BASP47
BHOH426
BHOH525
BHOH606
BHOH613
BHOH631

site_idAC6
Number of Residues2
Detailsbinding site for residue EDO B 301
ChainResidue
BASN64
BHOH497

Functional Information from PROSITE/UniProt
site_idPS00337
Number of Residues11
DetailsBETA_LACTAMASE_D Beta-lactamase class-D active site. PqSTFKVVnAL
ChainResidueDetails
APRO74-LEU84

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues2
DetailsACT_SITE: Acyl-ester intermediate => ECO:0000255|PROSITE-ProRule:PRU10103
ChainResidueDetails
ASER76
BSER76

site_idSWS_FT_FI2
Number of Residues2
DetailsBINDING: BINDING => ECO:0000250
ChainResidueDetails
ALYS214
BLYS214

site_idSWS_FT_FI3
Number of Residues2
DetailsMOD_RES: N6-carboxylysine => ECO:0000250
ChainResidueDetails
AALY79
BALY79

226707

PDB entries from 2024-10-30

PDB statisticsPDBj update infoContact PDBjnumon