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5DYK

Crystal structure of the cGMP-dependent protein kinase PKG from Plasmodium falciparum - Apo form

Replaces:  4MYJ
Functional Information from GO Data
ChainGOidnamespacecontents
A0000166molecular_functionnucleotide binding
A0004672molecular_functionprotein kinase activity
A0004674molecular_functionprotein serine/threonine kinase activity
A0004691molecular_functioncAMP-dependent protein kinase activity
A0004692molecular_functioncGMP-dependent protein kinase activity
A0005524molecular_functionATP binding
A0005737cellular_componentcytoplasm
A0005783cellular_componentendoplasmic reticulum
A0005789cellular_componentendoplasmic reticulum membrane
A0005952cellular_componentcAMP-dependent protein kinase complex
A0006468biological_processprotein phosphorylation
A0007189biological_processadenylate cyclase-activating G protein-coupled receptor signaling pathway
A0007276biological_processgamete generation
A0016020cellular_componentmembrane
A0016301molecular_functionkinase activity
A0016740molecular_functiontransferase activity
A0019898cellular_componentextrinsic component of membrane
A0030553molecular_functioncGMP binding
A0046872molecular_functionmetal ion binding
A0106310molecular_functionprotein serine kinase activity
Functional Information from PDB Data
site_idAC1
Number of Residues3
Detailsbinding site for residue EDO A 901
ChainResidue
AASN321
ALYS376
AHOH1005

site_idAC2
Number of Residues7
Detailsbinding site for residue EDO A 902
ChainResidue
AHOH1026
ASER175
AVAL176
AASP178
AMET179
ALEU281
AARG355

site_idAC3
Number of Residues6
Detailsbinding site for residue SO4 A 903
ChainResidue
AGLU450
AGLY452
ASER453
AARG454
ATYR456
AARG492

site_idAC4
Number of Residues5
Detailsbinding site for residue SO4 A 904
ChainResidue
ALEU514
AILE517
AGLN518
AGLY519
AHOH1025

site_idAC5
Number of Residues4
Detailsbinding site for residue GOL A 905
ChainResidue
AASP211
AVAL212
AARG250
AHOH1036

site_idAC6
Number of Residues2
Detailsbinding site for residue GOL A 906
ChainResidue
AASP227
AHOH1019

Functional Information from PROSITE/UniProt
site_idPS00107
Number of Residues24
DetailsPROTEIN_KINASE_ATP Protein kinases ATP-binding region signature. IGRGTFGTVKlVhhkptkir..........YALK
ChainResidueDetails
AILE547-LYS570

site_idPS00108
Number of Residues13
DetailsPROTEIN_KINASE_ST Serine/Threonine protein kinases active-site signature. IvYrDLKpeNILL
ChainResidueDetails
AILE660-LEU672

site_idPS00888
Number of Residues17
DetailsCNMP_BINDING_1 Cyclic nucleotide-binding domain signature 1. VIkQGEkGSyFFIInsG
ChainResidueDetails
AVAL85-GLY101
AILE203-GLY219
AILE445-GLY461

site_idPS00889
Number of Residues18
DetailsCNMP_BINDING_2 Cyclic nucleotide-binding domain signature 2. FGEaALihntq......RSAtIiA
ChainResidueDetails
APHE121-ALA138
APHE239-ALA256
APHE481-SER498

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues99
DetailsRegion: {"description":"cNMP-binding domain 2","evidences":[{"source":"PROSITE-ProRule","id":"PRU00060","evidenceCode":"ECO:0000255"}]}
ChainResidueDetails

site_idSWS_FT_FI2
Number of Residues103
DetailsRegion: {"description":"cNMP-binding domain 3","evidences":[{"source":"PROSITE-ProRule","id":"PRU00060","evidenceCode":"ECO:0000255"}]}
ChainResidueDetails

site_idSWS_FT_FI3
Number of Residues99
DetailsRegion: {"description":"cNMP-binding domain 4","evidences":[{"source":"PROSITE-ProRule","id":"PRU00060","evidenceCode":"ECO:0000255"}]}
ChainResidueDetails

site_idSWS_FT_FI4
Number of Residues1
DetailsActive site: {"description":"Proton acceptor","evidences":[{"source":"PROSITE-ProRule","id":"PRU00159","evidenceCode":"ECO:0000255"}]}
ChainResidueDetails

site_idSWS_FT_FI5
Number of Residues12
DetailsBinding site: {"evidences":[{"source":"UniProtKB","id":"Q8I719","evidenceCode":"ECO:0000250"}]}
ChainResidueDetails

site_idSWS_FT_FI6
Number of Residues1
DetailsBinding site: {"evidences":[{"source":"PROSITE-ProRule","id":"PRU00159","evidenceCode":"ECO:0000255"}]}
ChainResidueDetails

site_idSWS_FT_FI7
Number of Residues3
DetailsSite: {"description":"Part of a catalytic triad required for cGMP binding and cGMP-dependent kinase activity","evidences":[{"source":"UniProtKB","id":"Q8I719","evidenceCode":"ECO:0000250"}]}
ChainResidueDetails

238895

PDB entries from 2025-07-16

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