5DX1
Crystal structure of CARM1, sinefungin, and PABP1 peptide (R455)
Functional Information from GO Data
Chain | GOid | namespace | contents |
A | 0016274 | molecular_function | protein-arginine N-methyltransferase activity |
A | 0018216 | biological_process | peptidyl-arginine methylation |
B | 0016274 | molecular_function | protein-arginine N-methyltransferase activity |
B | 0018216 | biological_process | peptidyl-arginine methylation |
C | 0016274 | molecular_function | protein-arginine N-methyltransferase activity |
C | 0018216 | biological_process | peptidyl-arginine methylation |
D | 0016274 | molecular_function | protein-arginine N-methyltransferase activity |
D | 0018216 | biological_process | peptidyl-arginine methylation |
Functional Information from PDB Data
site_id | AC1 |
Number of Residues | 25 |
Details | binding site for residue SFG A 501 |
Chain | Residue |
A | TYR149 |
A | ILE197 |
A | LEU198 |
A | GLU214 |
A | ALA215 |
A | GLY240 |
A | LYS241 |
A | VAL242 |
A | GLU243 |
A | GLU257 |
A | MET268 |
A | PHE150 |
A | SER271 |
A | HOH620 |
A | HOH622 |
A | HOH658 |
A | HOH659 |
F | ARG7 |
A | TYR153 |
A | GLN159 |
A | MET162 |
A | ARG168 |
A | GLY192 |
A | CYS193 |
A | GLY194 |
site_id | AC2 |
Number of Residues | 3 |
Details | binding site for residue GOL A 502 |
Chain | Residue |
A | ASP392 |
A | TRP403 |
A | HOH717 |
site_id | AC3 |
Number of Residues | 25 |
Details | binding site for residue SFG B 501 |
Chain | Residue |
B | TYR149 |
B | PHE150 |
B | TYR153 |
B | GLN159 |
B | MET162 |
B | ARG168 |
B | GLY192 |
B | CYS193 |
B | GLY194 |
B | ILE197 |
B | LEU198 |
B | GLU214 |
B | ALA215 |
B | GLY240 |
B | LYS241 |
B | VAL242 |
B | GLU243 |
B | GLU257 |
B | MET268 |
B | SER271 |
B | HOH613 |
B | HOH617 |
B | HOH684 |
B | HOH687 |
G | ARG7 |
site_id | AC4 |
Number of Residues | 1 |
Details | binding site for residue GOL B 502 |
Chain | Residue |
B | ASP392 |
site_id | AC5 |
Number of Residues | 2 |
Details | binding site for residue GOL B 503 |
Chain | Residue |
B | PHE473 |
B | PHE474 |
site_id | AC6 |
Number of Residues | 24 |
Details | binding site for residue SFG C 501 |
Chain | Residue |
C | TYR149 |
C | TYR153 |
C | GLN159 |
C | MET162 |
C | ARG168 |
C | GLY192 |
C | CYS193 |
C | GLY194 |
C | ILE197 |
C | LEU198 |
C | GLU214 |
C | ALA215 |
C | GLY240 |
C | LYS241 |
C | VAL242 |
C | GLU243 |
C | GLU257 |
C | MET268 |
C | SER271 |
C | HOH608 |
C | HOH629 |
C | HOH648 |
C | HOH682 |
H | ARG7 |
site_id | AC7 |
Number of Residues | 2 |
Details | binding site for residue GOL C 502 |
Chain | Residue |
C | ASP392 |
C | TRP403 |
site_id | AC8 |
Number of Residues | 25 |
Details | binding site for residue SFG D 501 |
Chain | Residue |
D | GLU257 |
D | MET268 |
D | SER271 |
D | HOH620 |
D | HOH625 |
D | HOH662 |
D | HOH683 |
I | ARG7 |
D | TYR149 |
D | PHE150 |
D | TYR153 |
D | GLN159 |
D | MET162 |
D | ARG168 |
D | GLY192 |
D | CYS193 |
D | GLY194 |
D | ILE197 |
D | LEU198 |
D | GLU214 |
D | ALA215 |
D | GLY240 |
D | LYS241 |
D | VAL242 |
D | GLU243 |
Functional Information from SwissProt/UniProt
site_id | SWS_FT_FI1 |
Number of Residues | 8 |
Details | MOD_RES: Omega-N-methylated arginine; by CARM1; partial => ECO:0000305|PubMed:11850402 |
Chain | Residue | Details |
F | ARG7 | |
B | GLU214 | |
B | GLU243 | |
B | SER271 | |
C | GLN159 | |
C | ARG168 | |
C | GLY192 | |
C | GLU214 | |
C | GLU243 | |
C | SER271 | |
D | GLN159 | |
F | NMM12 | |
D | ARG168 | |
D | GLY192 | |
D | GLU214 | |
D | GLU243 | |
D | SER271 | |
G | ARG7 | |
G | NMM12 | |
H | ARG7 | |
H | NMM12 | |
I | ARG7 | |
I | NMM12 | |
B | GLY192 |
site_id | SWS_FT_FI2 |
Number of Residues | 4 |
Details | MOD_RES: Phosphoserine => ECO:0000269|PubMed:19843527 |
Chain | Residue | Details |
A | SER216 | |
B | SER216 | |
C | SER216 | |
D | SER216 |
site_id | SWS_FT_FI3 |
Number of Residues | 8 |
Details | CROSSLNK: Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in ubiquitin) => ECO:0000269|PubMed:34480022 |
Chain | Residue | Details |
A | LYS227 | |
B | LYS227 | |
C | LYS227 | |
D | LYS227 |