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5DV4

Crystal structure of human CNOT6L in complex with neomycin

Functional Information from GO Data
ChainGOidnamespacecontents
A0003824molecular_functioncatalytic activity
A0004535molecular_functionpoly(A)-specific ribonuclease activity
Functional Information from PDB Data
site_idAC1
Number of Residues21
Detailsbinding site for residue NMY A 601
ChainResidue
ALEU206
AASN412
ALEU414
AASN479
APHE484
AILE488
ASO4602
AHOH724
AHOH742
AHOH754
AHOH816
ATYR207
AHOH844
AHOH901
AGLU240
AHIS360
AMET361
ATRP363
APRO365
ALYS371
AASP410

site_idAC2
Number of Residues3
Detailsbinding site for residue SO4 A 602
ChainResidue
ATYR201
ATRP363
ANMY601

site_idAC3
Number of Residues6
Detailsbinding site for residue SO4 A 603
ChainResidue
ATHR243
AGLU244
ALYS278
AHOH800
AHOH826
AHOH883

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues1
DetailsActive site: {"description":"Proton donor/acceptor","evidences":[{"source":"PubMed","id":"20628353","evidenceCode":"ECO:0000305"},{"source":"PubMed","id":"27013054","evidenceCode":"ECO:0000305"}]}
ChainResidueDetails

site_idSWS_FT_FI2
Number of Residues4
DetailsBinding site: {"evidences":[{"source":"PubMed","id":"20628353","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"27013054","evidenceCode":"ECO:0000269"},{"source":"PDB","id":"3NGN","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"5DV2","evidenceCode":"ECO:0007744"}]}
ChainResidueDetails

site_idSWS_FT_FI3
Number of Residues1
DetailsBinding site: {"evidences":[{"source":"PubMed","id":"20628353","evidenceCode":"ECO:0000269"},{"source":"PDB","id":"3NGN","evidenceCode":"ECO:0007744"}]}
ChainResidueDetails

site_idSWS_FT_FI4
Number of Residues1
DetailsBinding site: {"evidences":[{"source":"PubMed","id":"20628353","evidenceCode":"ECO:0000269"}]}
ChainResidueDetails

site_idSWS_FT_FI5
Number of Residues1
DetailsBinding site: {"evidences":[{"source":"PubMed","id":"20628353","evidenceCode":"ECO:0000269"},{"source":"PDB","id":"3NGQ","evidenceCode":"ECO:0007744"}]}
ChainResidueDetails

site_idSWS_FT_FI6
Number of Residues1
DetailsBinding site: {"evidences":[{"source":"PubMed","id":"20628353","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"27013054","evidenceCode":"ECO:0000269"},{"source":"PDB","id":"5DV2","evidenceCode":"ECO:0007744"}]}
ChainResidueDetails

247536

PDB entries from 2026-01-14

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