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5DUL

1-deoxy-D-xylulose 5-phosphate reductoisomerase from Yersinia pestis in complex with NADPH

Functional Information from GO Data
ChainGOidnamespacecontents
A0008299biological_processisoprenoid biosynthetic process
A0016114biological_processterpenoid biosynthetic process
A0016491molecular_functionoxidoreductase activity
A0019288biological_processisopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway
A0030145molecular_functionmanganese ion binding
A0030604molecular_function1-deoxy-D-xylulose-5-phosphate reductoisomerase activity
A0046872molecular_functionmetal ion binding
A0051484biological_processisopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway involved in terpenoid biosynthetic process
A0070402molecular_functionNADPH binding
B0008299biological_processisoprenoid biosynthetic process
B0016114biological_processterpenoid biosynthetic process
B0016491molecular_functionoxidoreductase activity
B0019288biological_processisopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway
B0030145molecular_functionmanganese ion binding
B0030604molecular_function1-deoxy-D-xylulose-5-phosphate reductoisomerase activity
B0046872molecular_functionmetal ion binding
B0051484biological_processisopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway involved in terpenoid biosynthetic process
B0070402molecular_functionNADPH binding
C0008299biological_processisoprenoid biosynthetic process
C0016114biological_processterpenoid biosynthetic process
C0016491molecular_functionoxidoreductase activity
C0019288biological_processisopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway
C0030145molecular_functionmanganese ion binding
C0030604molecular_function1-deoxy-D-xylulose-5-phosphate reductoisomerase activity
C0046872molecular_functionmetal ion binding
C0051484biological_processisopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway involved in terpenoid biosynthetic process
C0070402molecular_functionNADPH binding
D0008299biological_processisoprenoid biosynthetic process
D0016114biological_processterpenoid biosynthetic process
D0016491molecular_functionoxidoreductase activity
D0019288biological_processisopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway
D0030145molecular_functionmanganese ion binding
D0030604molecular_function1-deoxy-D-xylulose-5-phosphate reductoisomerase activity
D0046872molecular_functionmetal ion binding
D0051484biological_processisopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway involved in terpenoid biosynthetic process
D0070402molecular_functionNADPH binding
Functional Information from PDB Data
site_idAC1
Number of Residues16
Detailsbinding site for residue NDP A 701
ChainResidue
AGLY8
AALA100
AILE101
AVAL102
AALA123
AASN124
ALYS125
AASP150
ATHR10
AGLY11
ASER12
AILE13
AALA35
AGLY36
AARG37
AASN38

site_idAC2
Number of Residues18
Detailsbinding site for residue NDP B 701
ChainResidue
BGLY8
BTHR10
BGLY11
BSER12
BILE13
BALA35
BGLY36
BARG37
BASN38
BSER57
BALA100
BILE101
BVAL102
BALA123
BASN124
BLYS125
BMET276
BHOH804

site_idAC3
Number of Residues16
Detailsbinding site for residue NDP C 701
ChainResidue
CGLY8
CTHR10
CGLY11
CSER12
CILE13
CALA35
CGLY36
CARG37
CASN38
CALA100
CILE101
CALA123
CASN124
CLYS125
CASP150
CMET276

site_idAC4
Number of Residues18
Detailsbinding site for residue NDP D 701
ChainResidue
DGLY8
DTHR10
DGLY11
DSER12
DILE13
DALA35
DGLY36
DARG37
DASN38
DSER57
DALA100
DILE101
DVAL102
DALA123
DASN124
DLYS125
DASP150
DMET276

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues80
DetailsBINDING: BINDING => ECO:0000255|HAMAP-Rule:MF_00183
ChainResidueDetails
ATHR10
AGLU126
AASP150
ASER151
AGLU152
ASER186
AHIS209
AGLY215
ASER222
AASN227
ALYS228
AGLY11
AGLU231
BTHR10
BGLY11
BSER12
BILE13
BGLY36
BARG37
BASN38
BASN124
BLYS125
ASER12
BGLU126
BASP150
BSER151
BGLU152
BSER186
BHIS209
BGLY215
BSER222
BASN227
BLYS228
AILE13
BGLU231
CTHR10
CGLY11
CSER12
CILE13
CGLY36
CARG37
CASN38
CASN124
CLYS125
AGLY36
CGLU126
CASP150
CSER151
CGLU152
CSER186
CHIS209
CGLY215
CSER222
CASN227
CLYS228
AARG37
CGLU231
DTHR10
DGLY11
DSER12
DILE13
DGLY36
DARG37
DASN38
DASN124
DLYS125
AASN38
DGLU126
DASP150
DSER151
DGLU152
DSER186
DHIS209
DGLY215
DSER222
DASN227
DLYS228
AASN124
DGLU231
ALYS125

220113

PDB entries from 2024-05-22

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