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5DTK

Fragments bound to the OXA-48 beta-lactamase: Compound 17

Functional Information from GO Data
ChainGOidnamespacecontents
A0008658molecular_functionpenicillin binding
A0008800molecular_functionbeta-lactamase activity
A0017001biological_processantibiotic catabolic process
B0008658molecular_functionpenicillin binding
B0008800molecular_functionbeta-lactamase activity
B0017001biological_processantibiotic catabolic process
C0008658molecular_functionpenicillin binding
C0008800molecular_functionbeta-lactamase activity
C0017001biological_processantibiotic catabolic process
D0008658molecular_functionpenicillin binding
D0008800molecular_functionbeta-lactamase activity
D0017001biological_processantibiotic catabolic process
Functional Information from PDB Data
site_idAC1
Number of Residues4
Detailsbinding site for residue CL A 301
ChainResidue
AARG206
AHOH673
DARG206
DHOH647

site_idAC2
Number of Residues4
Detailsbinding site for residue EDO A 302
ChainResidue
AARG107
AASN110
AHOH616
DASP229

site_idAC3
Number of Residues7
Detailsbinding site for residue EDO A 303
ChainResidue
AASP240
AMET241
APRO242
AHOH402
AHOH414
AHOH489
ASER40

site_idAC4
Number of Residues6
Detailsbinding site for residue EDO A 304
ChainResidue
ALEU81
ASER184
AARG186
ASER187
AHOH425
AHOH532

site_idAC5
Number of Residues7
Detailsbinding site for residue EDO A 305
ChainResidue
ALYS94
ATRP95
AASP96
APRO121
AVAL122
AHOH502
AHOH535

site_idAC6
Number of Residues16
Detailsbinding site for residue 5F3 A 306
ChainResidue
ASER70
AILE102
ATHR104
ATRP105
ATYR117
AVAL120
ATHR209
AGLY210
ATYR211
AARG250
AHOH403
AHOH404
AHOH407
AHOH408
AHOH410
AHOH690

site_idAC7
Number of Residues10
Detailsbinding site for residue 5F3 B 301
ChainResidue
BSER70
BILE102
BVAL120
BTHR209
BLEU247
BARG250
BHOH403
BHOH477
BHOH560
BHOH574

site_idAC8
Number of Residues4
Detailsbinding site for residue EDO B 302
ChainResidue
BTHR167
BILE170
BSER171
BARG174

site_idAC9
Number of Residues2
Detailsbinding site for residue EDO B 303
ChainResidue
BASP229
BHOH556

site_idAD1
Number of Residues5
Detailsbinding site for residue EDO B 304
ChainResidue
BLEU81
BSER184
BARG186
BSER187
BHOH473

site_idAD2
Number of Residues2
Detailsbinding site for residue CL C 301
ChainResidue
CARG206
CHOH659

site_idAD3
Number of Residues6
Detailsbinding site for residue EDO C 302
ChainResidue
AASN152
AHOH444
CARG128
CASP154
CHOH542
CHOH603

site_idAD4
Number of Residues6
Detailsbinding site for residue EDO C 303
ChainResidue
CALA65
CPHE66
CHOH422
CHOH423
CHOH454
CHOH495

site_idAD5
Number of Residues7
Detailsbinding site for residue EDO C 304
ChainResidue
CLYS94
CTRP95
CASP96
CPRO121
CVAL122
CHOH445
CHOH481

site_idAD6
Number of Residues6
Detailsbinding site for residue EDO C 305
ChainResidue
CLEU81
CSER184
CARG186
CSER187
CHOH430
CHOH433

site_idAD7
Number of Residues9
Detailsbinding site for residue EDO C 306
ChainResidue
CHOH416
CHOH593
CHIS38
CLYS39
CSER40
CASP240
CMET241
CPRO242
CLEU249

site_idAD8
Number of Residues14
Detailsbinding site for residue 5F3 C 307
ChainResidue
CSER70
CILE102
CTHR104
CTYR117
CVAL120
CTHR209
CGLY210
CTYR211
CARG250
CHOH401
CHOH403
CHOH404
CHOH405
CHOH406

site_idAD9
Number of Residues9
Detailsbinding site for residue 5F3 D 301
ChainResidue
DSER70
DILE102
DVAL120
DTHR209
DLEU247
DARG250
DHOH401
DHOH460
DHOH583

site_idAE1
Number of Residues6
Detailsbinding site for residue EDO D 302
ChainResidue
DASN32
DPHE35
DGLN41
DGLY42
DHOH496
DHOH498

Functional Information from PROSITE/UniProt
site_idPS00337
Number of Residues11
DetailsBETA_LACTAMASE_D Beta-lactamase class-D active site. PaSTFKIPnSL
ChainResidueDetails
APRO68-LEU78

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PDB entries from 2024-06-12

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