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5DT9

Crystal structure of a putative D-Erythronate-4-Phosphate Dehydrogenase from Vibrio cholerae

Functional Information from GO Data
ChainGOidnamespacecontents
A0005737cellular_componentcytoplasm
A0005829cellular_componentcytosol
A0008615biological_processpyridoxine biosynthetic process
A0016491molecular_functionoxidoreductase activity
A0016616molecular_functionoxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor
A0033711molecular_function4-phosphoerythronate dehydrogenase activity
A0036001biological_process'de novo' pyridoxal 5'-phosphate biosynthetic process
A0046983molecular_functionprotein dimerization activity
A0051287molecular_functionNAD binding
Functional Information from PDB Data
site_idAC1
Number of Residues21
Detailsbinding site for residue NAD A 401
ChainResidue
AASN98
AHIS181
ATHR182
APRO183
ATRP190
ATHR192
AALA213
AALA214
AARG215
AASP239
AHIS261
AGLY130
AALA263
AGLY264
AALA131
AGLY132
AGLN133
AVAL134
AASP153
APRO154
ALYS156

site_idAC2
Number of Residues3
Detailsbinding site for residue SO4 A 402
ChainResidue
AARG65
AHIS349
AHOH518

site_idAC3
Number of Residues3
Detailsbinding site for residue SO4 A 403
ChainResidue
AARG34
AARG50
ALYS67

site_idAC4
Number of Residues5
Detailsbinding site for residue SO4 A 404
ChainResidue
AARG50
ASER51
ATHR73
ALYS270
AHOH568

site_idAC5
Number of Residues5
Detailsbinding site for residue SO4 A 405
ChainResidue
AVAL79
AASP80
AGLN81
AALA82
AHOH548

site_idAC6
Number of Residues4
Detailsbinding site for residue SO4 A 406
ChainResidue
AASN152
APRO154
AGLU167
ALEU168

site_idAC7
Number of Residues4
Detailsbinding site for residue SO4 A 407
ChainResidue
AILE184
ATHR185
AARG186
AGLY187

site_idAC8
Number of Residues2
Detailsbinding site for residue SO4 A 408
ChainResidue
AARG272
APRO293

site_idAC9
Number of Residues3
Detailsbinding site for residue SO4 A 409
ChainResidue
AASN14
AASN64
AARG65

site_idAD1
Number of Residues3
Detailsbinding site for residue SO4 A 410
ChainResidue
AARG215
AGLY216
AGLU244

site_idAD2
Number of Residues4
Detailsbinding site for residue SO4 A 411
ChainResidue
AALA365
AHIS368
ALEU369
AALA370

site_idAD3
Number of Residues2
Detailsbinding site for residue CL A 412
ChainResidue
ATYR17
AALA20

site_idAD4
Number of Residues1
Detailsbinding site for residue CL A 413
ChainResidue
AASP77

Functional Information from PROSITE/UniProt
site_idPS00671
Number of Residues17
DetailsD_2_HYDROXYACID_DH_3 D-isomer specific 2-hydroxyacid dehydrogenases signature 3. LRsDqILINaARGpVVD
ChainResidueDetails
ALEU204-ASP220

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues2
DetailsACT_SITE: ACT_SITE => ECO:0000255|HAMAP-Rule:MF_01825
ChainResidueDetails
AARG215
AGLU244

site_idSWS_FT_FI2
Number of Residues1
DetailsACT_SITE: Proton donor => ECO:0000255|HAMAP-Rule:MF_01825
ChainResidueDetails
AHIS261

site_idSWS_FT_FI3
Number of Residues8
DetailsBINDING: BINDING => ECO:0000255|HAMAP-Rule:MF_01825
ChainResidueDetails
ASER51
ATHR73
AGLN133
AASP153
ATHR182
AASP239
AGLY264
ATYR265

223166

PDB entries from 2024-07-31

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