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5D7R

Crystal structure of the ATP binding domain of S. aureus GyrB complexed with a ligand

Functional Information from GO Data
ChainGOidnamespacecontents
A0003677molecular_functionDNA binding
A0003918molecular_functionDNA topoisomerase type II (double strand cut, ATP-hydrolyzing) activity
A0005524molecular_functionATP binding
A0006265biological_processDNA topological change
B0003677molecular_functionDNA binding
B0003918molecular_functionDNA topoisomerase type II (double strand cut, ATP-hydrolyzing) activity
B0005524molecular_functionATP binding
B0006265biological_processDNA topological change
Functional Information from PDB Data
site_idAC1
Number of Residues8
Detailsbinding site for residue MG A 301
ChainResidue
AASP53
AASN54
AASP57
AMG302
AHOH409
AHOH470
AHOH503
AHOH521

site_idAC2
Number of Residues6
Detailsbinding site for residue MG A 302
ChainResidue
AMG301
AHOH449
AHOH470
AHOH503
AHOH521
AGLU50

site_idAC3
Number of Residues6
Detailsbinding site for residue MG A 303
ChainResidue
AASP57
AASP57
AHOH409
AHOH409
AHOH524
AHOH524

site_idAC4
Number of Residues4
Detailsbinding site for residue MG A 304
ChainResidue
AGLY208
AHIS228
AHOH505
AHOH506

site_idAC5
Number of Residues3
Detailsbinding site for residue CL A 305
ChainResidue
AVAL88
AARG144
AASN145

site_idAC6
Number of Residues19
Detailsbinding site for residue 57Y A 306
ChainResidue
AILE51
AASN54
ASER55
AGLU58
AVAL79
AASP81
AARG84
AGLY85
AILE86
APRO87
AARG144
ATHR173
AILE175
AHOH406
AHOH406
AHOH408
AHOH432
AHOH443
AHOH537

site_idAC7
Number of Residues5
Detailsbinding site for residue MG B 301
ChainResidue
BASN54
BHOH409
BHOH429
BHOH506
BHOH533

site_idAC8
Number of Residues5
Detailsbinding site for residue MG B 302
ChainResidue
BGLY208
BHIS228
BHOH490
BHOH496
BHOH534

site_idAC9
Number of Residues4
Detailsbinding site for residue MG B 303
ChainResidue
BGLU164
BGLU219
BHOH461
BHOH487

site_idAD1
Number of Residues5
Detailsbinding site for residue MG B 304
ChainResidue
BASN82
BGLY83
BTHR171
BHOH467
BHOH520

site_idAD2
Number of Residues4
Detailsbinding site for residue MPD B 305
ChainResidue
BHIS143
BVAL174
BGLU186
BHOH485

site_idAD3
Number of Residues4
Detailsbinding site for residue CL B 306
ChainResidue
BVAL88
BASP89
BARG144
BASN145

site_idAD4
Number of Residues25
Detailsbinding site for residue 57Y B 307
ChainResidue
ATHR185
AGLU186
AHOH450
BASN54
BSER55
BGLU58
BVAL79
BASP81
BARG84
BGLY85
BILE86
BPRO87
BARG144
BTHR173
BILE175
BHOH401
BHOH402
BHOH403
BHOH404
BHOH413
BHOH432
BHOH434
BHOH454
BHOH509
BHOH510

Functional Information from PROSITE/UniProt
site_idPS00154
Number of Residues7
DetailsATPASE_E1_E2 E1-E2 ATPases phosphorylation site. DKTGTVI
ChainResidueDetails
AASP169-ILE175

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PDB entries from 2024-10-09

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