5D5L

PreQ1-II riboswitch with an engineered G-U wobble pair bound to Cs+

Functional Information from PDB Data

site_id	AC1
Number of Residues	2
Details	binding site for residue CS A 101

Chain	Residue
A	GTP1
A	G2

---

site_id	AC2
Number of Residues	4
Details	binding site for residue CS A 102

Chain	Residue
A	G5
A	G6
A	G14
A	U15

---

site_id	AC3
Number of Residues	2
Details	binding site for residue CS A 103

Chain	Residue
A	C16
A	HOH255

---

site_id	AC4
Number of Residues	5
Details	binding site for residue CS A 104

Chain	Residue
A	U44
A	C45
A	HOH253
B	C8
A	U28

---

site_id	AC5
Number of Residues	2
Details	binding site for residue CS A 105

Chain	Residue
A	G9
A	A10

---

site_id	AC6
Number of Residues	5
Details	binding site for residue CS A 106

Chain	Residue
A	U51
A	A52
A	U53
A	G64
A	G65

---

site_id	AC7
Number of Residues	1
Details	binding site for residue CS A 107

Chain	Residue
A	U53

---

site_id	AC8
Number of Residues	1
Details	binding site for residue CS A 108

Chain	Residue
A	C48

---

site_id	AC9
Number of Residues	1
Details	binding site for residue CS A 109

Chain	Residue
A	C69

---

site_id	AD1
Number of Residues	5
Details	binding site for residue CS A 110

Chain	Residue
A	U34
A	U35
A	U36
C	U36
C	G76

---

site_id	AD2
Number of Residues	4
Details	binding site for residue CS A 111

Chain	Residue
A	G58
A	G59
A	HOH252
A	HOH256

---

site_id	AD3
Number of Residues	2
Details	binding site for residue CS A 112

Chain	Residue
A	A27
A	C45

---

site_id	AD4
Number of Residues	2
Details	binding site for residue CS A 113

Chain	Residue
A	C37
A	C38

---

site_id	AD5
Number of Residues	3
Details	binding site for residue CS A 114

Chain	Residue
A	C22
A	U53
A	HOH240

---

site_id	AD6
Number of Residues	1
Details	binding site for residue CS A 115

Chain	Residue
A	U40

---

site_id	AD7
Number of Residues	4
Details	binding site for residue CS A 116

Chain	Residue
A	G59
A	C60
A	C66
A	HOH214

---

site_id	AD8
Number of Residues	6
Details	binding site for residue PRF A 117

Chain	Residue
A	C30
A	U31
A	U41
A	G42
A	A70
A	A71

---

site_id	AD9
Number of Residues	6
Details	binding site for residue MG A 118

Chain	Residue
A	U41
A	HOH202
A	HOH216
A	HOH220
A	HOH235
A	HOH236

---

site_id	AE1
Number of Residues	2
Details	binding site for residue MG A 119

Chain	Residue
A	U51
A	HOH238

---

site_id	AE2
Number of Residues	3
Details	binding site for residue MG A 120

Chain	Residue
A	U53
A	HOH208
A	HOH219

---

site_id	AE3
Number of Residues	6
Details	binding site for residue MG A 121

Chain	Residue
A	G73
A	HOH213
A	HOH223
A	HOH241
C	HOH204
C	HOH208

---

site_id	AE4
Number of Residues	2
Details	binding site for residue MG A 122

Chain	Residue
A	A52
A	U53

---

site_id	AE5
Number of Residues	2
Details	binding site for residue MG A 123

Chain	Residue
A	GTP1
A	U50

---

site_id	AE6
Number of Residues	4
Details	binding site for residue CS B 101

Chain	Residue
B	G5
B	G6
B	G14
B	U15

---

site_id	AE7
Number of Residues	2
Details	binding site for residue CS B 102

Chain	Residue
B	G9
B	A10

---

site_id	AE8
Number of Residues	1
Details	binding site for residue CS B 103

Chain	Residue
B	U57

---

site_id	AE9
Number of Residues	5
Details	binding site for residue CS B 104

Chain	Residue
B	U51
B	A52
B	U53
B	G64
B	G65

---

site_id	AF1
Number of Residues	2
Details	binding site for residue CS B 105

Chain	Residue
B	U51
B	U53

---

site_id	AF2
Number of Residues	1
Details	binding site for residue CS B 106

Chain	Residue
B	C69

---

site_id	AF3
Number of Residues	4
Details	binding site for residue CS B 107

Chain	Residue
B	C45
B	G46
B	HOH243
C	C19

---

site_id	AF4
Number of Residues	2
Details	binding site for residue CS B 108

Chain	Residue
B	GTP1
B	G2

---

site_id	AF5
Number of Residues	6
Details	binding site for residue PRF B 109

Chain	Residue
B	C30
B	U31
B	U41
B	G42
B	A70
B	A71

---

site_id	AF6
Number of Residues	6
Details	binding site for residue MG B 110

Chain	Residue
B	HOH209
B	HOH216
B	HOH219
B	HOH220
B	HOH250
B	A10

---

site_id	AF7
Number of Residues	6
Details	binding site for residue MG B 111

Chain	Residue
B	G73
B	HOH208
B	HOH214
B	HOH234
B	HOH235
D	HOH201

---

site_id	AF8
Number of Residues	1
Details	binding site for residue MG B 112

Chain	Residue
B	G42

---

site_id	AF9
Number of Residues	4
Details	binding site for residue CS C 101

Chain	Residue
C	G5
C	G6
C	G14
C	U15

---

site_id	AG1
Number of Residues	2
Details	binding site for residue CS C 102

Chain	Residue
C	G9
C	A10

---

site_id	AG2
Number of Residues	2
Details	binding site for residue CS C 103

Chain	Residue
C	C37
C	C38

---

site_id	AG3
Number of Residues	6
Details	binding site for residue PRF C 104

Chain	Residue
C	C30
C	U31
C	U41
C	G42
C	A70
C	A71

---

site_id	AG4
Number of Residues	4
Details	binding site for residue MG C 105

Chain	Residue
C	A10
C	HOH221
C	HOH222
C	HOH223

---

site_id	AG5
Number of Residues	5
Details	binding site for residue MG C 106

Chain	Residue
C	GTP1
C	G2
C	A3
C	HOH210
C	HOH214

---

site_id	AG6
Number of Residues	2
Details	binding site for residue MG C 107

Chain	Residue
C	G9
C	HOH218

---

site_id	AG7
Number of Residues	2
Details	binding site for residue CS D 101

Chain	Residue
D	G9
D	A10

---

site_id	AG8
Number of Residues	5
Details	binding site for residue CS D 102

Chain	Residue
D	G5
D	G6
D	G14
D	U15
D	HOH210

---

site_id	AG9
Number of Residues	2
Details	binding site for residue CS D 103

Chain	Residue
D	G6
D	C16

---

site_id	AH1
Number of Residues	2
Details	binding site for residue CS D 104

Chain	Residue
D	G58
D	HOH234

---

site_id	AH2
Number of Residues	1
Details	binding site for residue CS D 105

Chain	Residue
D	GTP1

---

site_id	AH3
Number of Residues	6
Details	binding site for residue PRF D 106

Chain	Residue
D	C30
D	U31
D	U41
D	G42
D	A70
D	A71

---

site_id	AH4
Number of Residues	5
Details	binding site for residue MG D 107

Chain	Residue
D	A10
D	HOH211
D	HOH212
D	HOH216
D	HOH238

---

site_id	AH5
Number of Residues	4
Details	binding site for residue MG D 108

Chain	Residue
D	G9
D	HOH213
D	HOH214
D	HOH237

---

site_id	AH6
Number of Residues	5
Details	binding site for residue MG D 109

Chain	Residue
D	U51
D	A52
D	U53
D	G64
D	G65

---