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5D08

Crystal structure of selenomethionine-labeled epoxyqueuosine reductase

Functional Information from GO Data
ChainGOidnamespacecontents
A0005737cellular_componentcytoplasm
A0006400biological_processtRNA modification
A0008033biological_processtRNA processing
A0008616biological_processqueuosine biosynthetic process
A0016491molecular_functionoxidoreductase activity
A0046872molecular_functionmetal ion binding
A0051536molecular_functioniron-sulfur cluster binding
A0051539molecular_function4 iron, 4 sulfur cluster binding
A0052693molecular_functionepoxyqueuosine reductase activity
B0005737cellular_componentcytoplasm
B0006400biological_processtRNA modification
B0008033biological_processtRNA processing
B0008616biological_processqueuosine biosynthetic process
B0016491molecular_functionoxidoreductase activity
B0046872molecular_functionmetal ion binding
B0051536molecular_functioniron-sulfur cluster binding
B0051539molecular_function4 iron, 4 sulfur cluster binding
B0052693molecular_functionepoxyqueuosine reductase activity
Functional Information from PDB Data
site_idAC1
Number of Residues9
Detailsbinding site for residue SF4 A 501
ChainResidue
AALA153
ALYS154
AASN155
ACYS188
ACYS191
ACYS194
ACYS247
APRO248
ALEU249

site_idAC2
Number of Residues6
Detailsbinding site for residue SF4 A 502
ChainResidue
ACYS198
ALEU209
ACYS214
AILE215
ACYS240
ACYS243

site_idAC3
Number of Residues39
Detailsbinding site for residue B12 A 503
ChainResidue
ASER32
ALEU33
AARG36
ASER47
AGLU50
AARG57
ACYS97
AASP134
ALEU138
ASER139
AASP140
AARG141
AALA142
ASER152
AASN155
ACYS156
AMSE157
AILE158
ASER165
AVAL167
ALEU169
APRO206
AGLY207
ALEU209
ASER216
AGLY239
ACYS240
AASP241
ACYS243
AGLN244
AHOH643
AHOH693
AHOH731
AHOH744
AHOH758
AHOH770
AHOH779
AHOH832
AHOH844

site_idAC4
Number of Residues8
Detailsbinding site for residue GOL A 504
ChainResidue
APHE49
AASP134
AGLN220
ATYR238
ATRP294
AHOH606
AHOH660
AHOH770

site_idAC5
Number of Residues8
Detailsbinding site for residue PO4 A 505
ChainResidue
ALYS112
AHIS258
APRO259
AGLU260
AHOH673
AHOH735
BLYS354
BLYS358

site_idAC6
Number of Residues8
Detailsbinding site for residue PO4 A 506
ChainResidue
ALYS354
ALYS358
AHOH679
AHOH689
BLYS112
BHIS258
BPRO259
BGLU260

site_idAC7
Number of Residues7
Detailsbinding site for residue SF4 B 501
ChainResidue
BALA153
BLYS154
BASN155
BCYS188
BCYS191
BCYS194
BCYS247

site_idAC8
Number of Residues8
Detailsbinding site for residue SF4 B 502
ChainResidue
BCYS198
BLEU203
BLEU209
BCYS214
BILE215
BCYS240
BTHR242
BCYS243

site_idAC9
Number of Residues36
Detailsbinding site for residue B12 B 503
ChainResidue
BCYS97
BASP134
BLEU138
BSER139
BASP140
BARG141
BALA142
BSER152
BASN155
BCYS156
BMSE157
BILE158
BSER165
BVAL167
BLEU169
BPRO206
BLEU209
BSER216
BGLY239
BCYS240
BASP241
BCYS243
BGLN244
BHOH641
BHOH658
BHOH659
BHOH684
BHOH688
BHOH710
BHOH777
BSER32
BLEU33
BARG36
BSER47
BGLU50
BARG57

site_idAD1
Number of Residues7
Detailsbinding site for residue GOL B 504
ChainResidue
BASP134
BGLN220
BTYR238
BTRP294
BHOH606
BHOH659
BHOH716

Functional Information from PROSITE/UniProt
site_idPS00198
Number of Residues12
Details4FE4S_FER_1 4Fe-4S ferredoxin-type iron-sulfur binding region signature. CgSCTkCLdACP
ChainResidueDetails
ACYS188-PRO199

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues2
DetailsACT_SITE: Proton donor => ECO:0000305|PubMed:27638883
ChainResidueDetails
AASP134
BASP134

site_idSWS_FT_FI2
Number of Residues34
DetailsBINDING: BINDING => ECO:0000269|PubMed:27638883, ECO:0007744|PDB:5D0B
ChainResidueDetails
AARG57
ACYS191
ACYS194
ACYS198
ACYS214
ASER216
ACYS240
ACYS243
ACYS247
BARG57
BCYS97
ACYS97
BASP134
BSER139
BSER152
BASN155
BILE158
BLEU169
BCYS188
BCYS191
BCYS194
BCYS198
AASP134
BCYS214
BSER216
BCYS240
BCYS243
BCYS247
ASER139
ASER152
AASN155
AILE158
ALEU169
ACYS188

site_idSWS_FT_FI3
Number of Residues14
DetailsBINDING: BINDING => ECO:0000269|PubMed:27638883
ChainResidueDetails
AGLN220
BASN280
BARG281
BARG295
BLYS297
BLYS298
ALYS222
AASN280
AARG281
AARG295
ALYS297
ALYS298
BGLN220
BLYS222

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PDB entries from 2024-07-10

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