5CYK

Structure of Ytm1 bound to the C-terminal domain of Erb1-R486E

Functional Information from GO Data

Chain	GOid	namespace	contents
A	0000463	biological_process	maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
A	0000466	biological_process	maturation of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
A	0005634	cellular_component	nucleus
A	0005654	cellular_component	nucleoplasm
A	0005730	cellular_component	nucleolus
A	0006364	biological_process	rRNA processing
A	0030687	cellular_component	preribosome, large subunit precursor
A	0042254	biological_process	ribosome biogenesis
A	0042273	biological_process	ribosomal large subunit biogenesis
A	0043021	molecular_function	ribonucleoprotein complex binding
A	0070545	cellular_component	PeBoW complex
B	0042254	biological_process	ribosome biogenesis

Functional Information from PDB Data

site_id	AC1
Number of Residues	2
Details	binding site for residue CL A 501

Chain	Residue
A	ARG414
A	ARG454

---

site_id	AC2
Number of Residues	1
Details	binding site for residue CL A 502

Chain	Residue
A	ARG287

---

site_id	AC3
Number of Residues	1
Details	binding site for residue CL B 901

Chain	Residue
B	ARG575

---

site_id	AC4
Number of Residues	2
Details	binding site for residue CL B 902

Chain	Residue
B	ARG450
B	ARG798

---

site_id	AC5
Number of Residues	1
Details	binding site for residue CL B 903

Chain	Residue
B	GLN487

---

Functional Information from PROSITE/UniProt

site_id	PS00678
Number of Residues	15
Details	WD_REPEATS_1 Trp-Asp (WD) repeats signature. LATGgdDgTVRVWEL

Chain	Residue	Details
B	LEU468-LEU482
A	VAL146-ALA160
A	LEU404-LEU418

---

Functional Information from SwissProt/UniProt

site_id	SWS_FT_FI1
Number of Residues	38
Details	Repeat: {"description":"WD 2","evidences":[{"source":"HAMAP-Rule","id":"MF_03029","evidenceCode":"ECO:0000255"}]}

Chain

Residue

Details

---

site_id	SWS_FT_FI2
Number of Residues	39
Details	Repeat: {"description":"WD 3","evidences":[{"source":"HAMAP-Rule","id":"MF_03029","evidenceCode":"ECO:0000255"}]}

Chain

Residue

Details

---

site_id	SWS_FT_FI3
Number of Residues	41
Details	Repeat: {"description":"WD 5","evidences":[{"source":"HAMAP-Rule","id":"MF_03029","evidenceCode":"ECO:0000255"}]}

Chain

Residue

Details

---

site_id	SWS_FT_FI4
Number of Residues	40
Details	Repeat: {"description":"WD 6","evidences":[{"source":"HAMAP-Rule","id":"MF_03029","evidenceCode":"ECO:0000255"}]}

Chain

Residue

Details

---

site_id	SWS_FT_FI5
Number of Residues	82
Details	Region: {"description":"Ubiquitin-like (UBL) domain","evidences":[{"source":"HAMAP-Rule","id":"MF_03029","evidenceCode":"ECO:0000255"},{"source":"PubMed","id":"26476442","evidenceCode":"ECO:0000305"}]}

Chain

Residue

Details

---

site_id	SWS_FT_FI6
Number of Residues	39
Details	Repeat: {"description":"WD 1","evidences":[{"source":"HAMAP-Rule","id":"MF_03027","evidenceCode":"ECO:0000255"}]}

Chain

Residue

Details

---

site_id	SWS_FT_FI7
Number of Residues	40
Details	Repeat: {"description":"WD 2","evidences":[{"source":"HAMAP-Rule","id":"MF_03027","evidenceCode":"ECO:0000255"}]}

Chain

Residue

Details

---

site_id	SWS_FT_FI8
Number of Residues	42
Details	Repeat: {"description":"WD 3","evidences":[{"source":"HAMAP-Rule","id":"MF_03027","evidenceCode":"ECO:0000255"}]}

Chain

Residue

Details

---

site_id	SWS_FT_FI9
Number of Residues	38
Details	Repeat: {"description":"WD 4","evidences":[{"source":"HAMAP-Rule","id":"MF_03027","evidenceCode":"ECO:0000255"}]}

Chain

Residue

Details

---

site_id	SWS_FT_FI10
Number of Residues	39
Details	Repeat: {"description":"WD 5","evidences":[{"source":"HAMAP-Rule","id":"MF_03027","evidenceCode":"ECO:0000255"}]}

Chain

Residue

Details

---

site_id	SWS_FT_FI11
Number of Residues	40
Details	Repeat: {"description":"WD 6","evidences":[{"source":"HAMAP-Rule","id":"MF_03027","evidenceCode":"ECO:0000255"}]}

Chain

Residue

Details

---

site_id	SWS_FT_FI12
Number of Residues	30
Details	Repeat: {"description":"WD 7","evidences":[{"source":"HAMAP-Rule","id":"MF_03027","evidenceCode":"ECO:0000255"}]}

Chain

Residue

Details

---