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5CY9

Crystal Structure of the first bromodomain of human BRD4 in complex with benzo[cd]indol-2(1H)-one ligand

Functional Information from PDB Data
site_idAC1
Number of Residues9
Detailsbinding site for residue GOL A 201
ChainResidue
AASN52
AGLN85
APRO86
AVAL87
AASP88
ATRP120
AHOH311
AHOH352
AHOH361

site_idAC2
Number of Residues11
Detailsbinding site for residue E0A A 202
ChainResidue
APRO56
ATRP81
APHE83
AVAL87
ALEU92
AASN140
AASP145
AMET149
AHOH305
AHOH316
AHOH385

site_idAC3
Number of Residues5
Detailsbinding site for residue EDO A 203
ChainResidue
AARG41
AALA89
ALEU94
ATYR97
AHOH388

site_idAC4
Number of Residues5
Detailsbinding site for residue EDO A 204
ChainResidue
ASER51
AASN52
ALYS57
AASN116
AHOH306

site_idAC5
Number of Residues1
Detailsbinding site for residue EDO A 205
ChainResidue
ALYS111

Functional Information from PROSITE/UniProt
site_idPS00633
Number of Residues60
DetailsBROMODOMAIN_1 Bromodomain signature. AwpFqqpvDavklnlpDYYkiIktpMdmgtIkkrlenny..Ywnaqeciqdfnt.MftNCyiY
ChainResidueDetails
AALA80-TYR139

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues1
DetailsSITE: Acetylated histone binding => ECO:0000269|PubMed:22464331
ChainResidueDetails
AASN140

site_idSWS_FT_FI2
Number of Residues2
DetailsCROSSLNK: Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in SUMO2) => ECO:0007744|PubMed:28112733
ChainResidueDetails
ALYS99

223790

PDB entries from 2024-08-14

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