5CXB

Structure of Ytm1 bound to the C-terminal domain of Erb1 in P21 21 2 space group

Functional Information from GO Data

Chain	GOid	namespace	contents
A	0000463	biological_process	maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
A	0000466	biological_process	maturation of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
A	0005634	cellular_component	nucleus
A	0005654	cellular_component	nucleoplasm
A	0005730	cellular_component	nucleolus
A	0006364	biological_process	rRNA processing
A	0030687	cellular_component	preribosome, large subunit precursor
A	0042254	biological_process	ribosome biogenesis
A	0042273	biological_process	ribosomal large subunit biogenesis
A	0043021	molecular_function	ribonucleoprotein complex binding
A	0070545	cellular_component	PeBoW complex
B	0042254	biological_process	ribosome biogenesis

Functional Information from PDB Data

site_id	AC1
Number of Residues	4
Details	binding site for residue EDO A 501

Chain	Residue
A	LYS181
A	ASP229
A	HOH684
A	HOH688

---

site_id	AC2
Number of Residues	5
Details	binding site for residue EDO A 502

Chain	Residue
A	ASP64
A	SER98
A	LEU99
A	ASP417
A	ARG419

---

site_id	AC3
Number of Residues	3
Details	binding site for residue EDO A 503

Chain	Residue
A	ILE41
A	ARG42
A	GLY45

---

site_id	AC4
Number of Residues	5
Details	binding site for residue NA A 504

Chain	Residue
A	GLU442
A	ARG443
A	TRP446
A	ARG454
A	HOH829

---

site_id	AC5
Number of Residues	6
Details	binding site for residue GOL A 505

Chain	Residue
A	THR58
A	SER60
A	ILE61
A	LYS256
A	ALA257
A	ARG287

---

site_id	AC6
Number of Residues	1
Details	binding site for residue CL B 901

Chain	Residue
B	GLN487

---

site_id	AC7
Number of Residues	5
Details	binding site for residue GOL B 902

Chain	Residue
B	HIS597
B	ARG598
B	ARG599
B	ARG645
B	PRO646

---

Functional Information from PROSITE/UniProt

site_id	PS00678
Number of Residues	15
Details	WD_REPEATS_1 Trp-Asp (WD) repeats signature. VLSAsyDgLLRIWNA

Chain	Residue	Details
A	VAL146-ALA160
A	LEU404-LEU418
B	LEU468-LEU482

---

Functional Information from SwissProt/UniProt

site_id	SWS_FT_FI1
Number of Residues	39
Details	Repeat: {"description":"WD 1","evidences":[{"source":"HAMAP-Rule","id":"MF_03029","evidenceCode":"ECO:0000255"}]}

Chain

Residue

Details

---

site_id	SWS_FT_FI2
Number of Residues	38
Details	Repeat: {"description":"WD 2","evidences":[{"source":"HAMAP-Rule","id":"MF_03029","evidenceCode":"ECO:0000255"}]}

Chain

Residue

Details

---

site_id	SWS_FT_FI3
Number of Residues	39
Details	Repeat: {"description":"WD 3","evidences":[{"source":"HAMAP-Rule","id":"MF_03029","evidenceCode":"ECO:0000255"}]}

Chain

Residue

Details

---

site_id	SWS_FT_FI4
Number of Residues	41
Details	Repeat: {"description":"WD 5","evidences":[{"source":"HAMAP-Rule","id":"MF_03029","evidenceCode":"ECO:0000255"}]}

Chain

Residue

Details

---

site_id	SWS_FT_FI5
Number of Residues	40
Details	Repeat: {"description":"WD 6","evidences":[{"source":"HAMAP-Rule","id":"MF_03029","evidenceCode":"ECO:0000255"}]}

Chain

Residue

Details

---

site_id	SWS_FT_FI6
Number of Residues	82
Details	Region: {"description":"Ubiquitin-like (UBL) domain","evidences":[{"source":"HAMAP-Rule","id":"MF_03029","evidenceCode":"ECO:0000255"},{"source":"PubMed","id":"26476442","evidenceCode":"ECO:0000305"}]}

Chain

Residue

Details

---

site_id	SWS_FT_FI7
Number of Residues	39
Details	Repeat: {"description":"WD 1","evidences":[{"source":"HAMAP-Rule","id":"MF_03027","evidenceCode":"ECO:0000255"}]}

Chain

Residue

Details

---

site_id	SWS_FT_FI8
Number of Residues	40
Details	Repeat: {"description":"WD 2","evidences":[{"source":"HAMAP-Rule","id":"MF_03027","evidenceCode":"ECO:0000255"}]}

Chain

Residue

Details

---

site_id	SWS_FT_FI9
Number of Residues	42
Details	Repeat: {"description":"WD 3","evidences":[{"source":"HAMAP-Rule","id":"MF_03027","evidenceCode":"ECO:0000255"}]}

Chain

Residue

Details

---

site_id	SWS_FT_FI10
Number of Residues	38
Details	Repeat: {"description":"WD 4","evidences":[{"source":"HAMAP-Rule","id":"MF_03027","evidenceCode":"ECO:0000255"}]}

Chain

Residue

Details

---

site_id	SWS_FT_FI11
Number of Residues	39
Details	Repeat: {"description":"WD 5","evidences":[{"source":"HAMAP-Rule","id":"MF_03027","evidenceCode":"ECO:0000255"}]}

Chain

Residue

Details

---

site_id	SWS_FT_FI12
Number of Residues	40
Details	Repeat: {"description":"WD 6","evidences":[{"source":"HAMAP-Rule","id":"MF_03027","evidenceCode":"ECO:0000255"}]}

Chain

Residue

Details

---

site_id	SWS_FT_FI13
Number of Residues	30
Details	Repeat: {"description":"WD 7","evidences":[{"source":"HAMAP-Rule","id":"MF_03027","evidenceCode":"ECO:0000255"}]}

Chain

Residue

Details

---