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5CFE

Bacillus subtilis AP endonuclease ExoA

Functional Information from GO Data
ChainGOidnamespacecontents
A0003677molecular_functionDNA binding
A0003824molecular_functioncatalytic activity
A0003906molecular_functionDNA-(apurinic or apyrimidinic site) endonuclease activity
A0004518molecular_functionnuclease activity
A0004519molecular_functionendonuclease activity
A0004527molecular_functionexonuclease activity
A0005737cellular_componentcytoplasm
A0006281biological_processDNA repair
A0006284biological_processbase-excision repair
A0008081molecular_functionphosphoric diester hydrolase activity
A0008311molecular_functiondouble-stranded DNA 3'-5' DNA exonuclease activity
A0016787molecular_functionhydrolase activity
A0046872molecular_functionmetal ion binding
Functional Information from PDB Data
site_idAC1
Number of Residues6
Detailsbinding site for residue CA A 301
ChainResidue
AASN9
AGLU36
AHOH415
AHOH462
AHOH529
AHOH557

site_idAC2
Number of Residues3
Detailsbinding site for residue PEG A 302
ChainResidue
AGLU133
ALEU134
ALYS137

site_idAC3
Number of Residues5
Detailsbinding site for residue PEG A 303
ChainResidue
AILE78
ATYR79
AILE81
AGLY82
AHOH404

site_idAC4
Number of Residues7
Detailsbinding site for residue PEG A 304
ChainResidue
AALA165
ATRP200
ATRP214
AHOH417
AHOH418
AHOH465
AHOH484

site_idAC5
Number of Residues5
Detailsbinding site for residue CA A 305
ChainResidue
AGLU27
AGLU98
AGLU247
AHOH514
AHOH549

site_idAC6
Number of Residues4
Detailsbinding site for residue CA A 306
ChainResidue
AGLU195
AHOH548
AHOH562
AHOH572

Functional Information from PROSITE/UniProt
site_idPS00726
Number of Residues10
DetailsAP_NUCLEASE_F1_1 AP endonucleases family 1 signature 1. ADIICLQETK
ChainResidueDetails
AALA29-LYS38

site_idPS00727
Number of Residues17
DetailsAP_NUCLEASE_F1_2 AP endonucleases family 1 signature 2. DSFRHvypdlegaYSWW
ChainResidueDetails
AASP185-TRP201

site_idPS00728
Number of Residues12
DetailsAP_NUCLEASE_F1_3 AP endonucleases family 1 signature 3. NiGwRIDYfVvS
ChainResidueDetails
AASN211-SER222

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues1
DetailsActive site: {"evidences":[{"evidenceCode":"ECO:0000250"}]}
ChainResidueDetails

site_idSWS_FT_FI2
Number of Residues1
DetailsActive site: {"description":"Proton donor/acceptor","evidences":[{"evidenceCode":"ECO:0000250"}]}
ChainResidueDetails

site_idSWS_FT_FI3
Number of Residues4
DetailsBinding site: {"evidences":[{"evidenceCode":"ECO:0000250"}]}
ChainResidueDetails

site_idSWS_FT_FI4
Number of Residues1
DetailsSite: {"description":"Transition state stabilizer","evidences":[{"evidenceCode":"ECO:0000250"}]}
ChainResidueDetails

site_idSWS_FT_FI5
Number of Residues1
DetailsSite: {"description":"Important for catalytic activity","evidences":[{"evidenceCode":"ECO:0000250"}]}
ChainResidueDetails

site_idSWS_FT_FI6
Number of Residues1
DetailsSite: {"description":"Interaction with DNA substrate","evidences":[{"evidenceCode":"ECO:0000250"}]}
ChainResidueDetails

239803

PDB entries from 2025-08-06

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