Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

5CBM

Crystal structure of PfA-M17 with virtual ligand inhibitor

Functional Information from GO Data
ChainGOidnamespacecontents
A0005737cellular_componentcytoplasm
A0006508biological_processproteolysis
A0019538biological_processprotein metabolic process
A0030145molecular_functionmanganese ion binding
A0046872molecular_functionmetal ion binding
A0070006molecular_functionmetalloaminopeptidase activity
B0005737cellular_componentcytoplasm
B0006508biological_processproteolysis
B0019538biological_processprotein metabolic process
B0030145molecular_functionmanganese ion binding
B0046872molecular_functionmetal ion binding
B0070006molecular_functionmetalloaminopeptidase activity
C0005737cellular_componentcytoplasm
C0006508biological_processproteolysis
C0019538biological_processprotein metabolic process
C0030145molecular_functionmanganese ion binding
C0046872molecular_functionmetal ion binding
C0070006molecular_functionmetalloaminopeptidase activity
D0005737cellular_componentcytoplasm
D0006508biological_processproteolysis
D0019538biological_processprotein metabolic process
D0030145molecular_functionmanganese ion binding
D0046872molecular_functionmetal ion binding
D0070006molecular_functionmetalloaminopeptidase activity
E0005737cellular_componentcytoplasm
E0006508biological_processproteolysis
E0019538biological_processprotein metabolic process
E0030145molecular_functionmanganese ion binding
E0046872molecular_functionmetal ion binding
E0070006molecular_functionmetalloaminopeptidase activity
F0005737cellular_componentcytoplasm
F0006508biological_processproteolysis
F0019538biological_processprotein metabolic process
F0030145molecular_functionmanganese ion binding
F0046872molecular_functionmetal ion binding
F0070006molecular_functionmetalloaminopeptidase activity
G0005737cellular_componentcytoplasm
G0006508biological_processproteolysis
G0019538biological_processprotein metabolic process
G0030145molecular_functionmanganese ion binding
G0046872molecular_functionmetal ion binding
G0070006molecular_functionmetalloaminopeptidase activity
H0005737cellular_componentcytoplasm
H0006508biological_processproteolysis
H0019538biological_processprotein metabolic process
H0030145molecular_functionmanganese ion binding
H0046872molecular_functionmetal ion binding
H0070006molecular_functionmetalloaminopeptidase activity
I0005737cellular_componentcytoplasm
I0006508biological_processproteolysis
I0019538biological_processprotein metabolic process
I0030145molecular_functionmanganese ion binding
I0046872molecular_functionmetal ion binding
I0070006molecular_functionmetalloaminopeptidase activity
J0005737cellular_componentcytoplasm
J0006508biological_processproteolysis
J0019538biological_processprotein metabolic process
J0030145molecular_functionmanganese ion binding
J0046872molecular_functionmetal ion binding
J0070006molecular_functionmetalloaminopeptidase activity
K0005737cellular_componentcytoplasm
K0006508biological_processproteolysis
K0019538biological_processprotein metabolic process
K0030145molecular_functionmanganese ion binding
K0046872molecular_functionmetal ion binding
K0070006molecular_functionmetalloaminopeptidase activity
L0005737cellular_componentcytoplasm
L0006508biological_processproteolysis
L0019538biological_processprotein metabolic process
L0030145molecular_functionmanganese ion binding
L0046872molecular_functionmetal ion binding
L0070006molecular_functionmetalloaminopeptidase activity
Functional Information from PDB Data
site_idAC1
Number of Residues8
Detailsbinding site for residue CO3 A 701
ChainResidue
ALYS374
AALA460
AGLU461
AGLY462
AARG463
ALEU487
A4ZN704
AHOH924

site_idAC2
Number of Residues6
Detailsbinding site for residue ZN A 702
ChainResidue
AASP379
AASP399
AGLU461
AZN703
A4ZN704
ALYS374

site_idAC3
Number of Residues6
Detailsbinding site for residue ZN A 703
ChainResidue
AASP379
ALYS386
AASP459
AGLU461
AZN702
A4ZN704

site_idAC4
Number of Residues17
Detailsbinding site for residue 4ZN A 704
ChainResidue
ALYS374
AASP379
ALYS386
AMET396
APHE398
AASP399
AASP459
AGLU461
ATHR486
ALEU487
ATHR488
AGLY489
ACO3701
AZN702
AZN703
AHOH804
AHOH924

site_idAC5
Number of Residues4
Detailsbinding site for residue 1PE A 705
ChainResidue
ATYR103
AASN104
AHIS108
ATYR411

site_idAC6
Number of Residues3
Detailsbinding site for residue 1PE A 706
ChainResidue
AGLU316
ALYS320
ASO4708

site_idAC7
Number of Residues4
Detailsbinding site for residue GOL A 707
ChainResidue
AASN505
AASN506
AASN568
AALA570

site_idAC8
Number of Residues3
Detailsbinding site for residue SO4 A 708
ChainResidue
ATYR103
AASN104
A1PE706

site_idAC9
Number of Residues3
Detailsbinding site for residue SO4 A 709
ChainResidue
AGLY390
ASER391
AMET392

site_idAD1
Number of Residues4
Detailsbinding site for residue SO4 A 710
ChainResidue
AGLY126
ALEU219
ASER220
AHOH878

site_idAD2
Number of Residues4
Detailsbinding site for residue SO4 A 711
ChainResidue
AMET392
ALEU492
APHE583
FLYS552

site_idAD3
Number of Residues7
Detailsbinding site for residue SO4 A 712
ChainResidue
AARG463
AGLN546
AILE547
ASER548
ASER554
AVAL557
AHOH900

site_idAD4
Number of Residues7
Detailsbinding site for residue CO3 B 701
ChainResidue
BALA460
BGLU461
BGLY462
BARG463
BLEU487
B4ZN704
BHOH955

site_idAD5
Number of Residues6
Detailsbinding site for residue ZN B 702
ChainResidue
BLYS374
BASP379
BASP399
BGLU461
BZN703
B4ZN704

site_idAD6
Number of Residues5
Detailsbinding site for residue ZN B 703
ChainResidue
BASP379
BASP459
BGLU461
BZN702
B4ZN704

site_idAD7
Number of Residues15
Detailsbinding site for residue 4ZN B 704
ChainResidue
BZN702
BZN703
BHOH955
BLYS374
BASP379
BLYS386
BMET396
BPHE398
BASP399
BASP459
BGLU461
BTHR486
BLEU487
BGLY489
BCO3701

site_idAD8
Number of Residues5
Detailsbinding site for residue 1PE B 705
ChainResidue
BTYR103
BASN104
BHIS108
BLYS320
B1PE706

site_idAD9
Number of Residues5
Detailsbinding site for residue 1PE B 706
ChainResidue
BTYR103
BGLU316
BLYS320
B1PE705
H1PE706

site_idAE1
Number of Residues6
Detailsbinding site for residue SO4 B 707
ChainResidue
ASER435
ALYS436
BSER435
BLYS436
CSER435
CLYS436

site_idAE2
Number of Residues7
Detailsbinding site for residue CO3 C 701
ChainResidue
CLYS374
CALA460
CGLU461
CGLY462
CARG463
CLEU487
C4ZN704

site_idAE3
Number of Residues6
Detailsbinding site for residue ZN C 702
ChainResidue
CLYS374
CASP379
CASP399
CGLU461
CZN703
C4ZN704

site_idAE4
Number of Residues5
Detailsbinding site for residue ZN C 703
ChainResidue
CASP379
CASP459
CGLU461
CZN702
C4ZN704

site_idAE5
Number of Residues17
Detailsbinding site for residue 4ZN C 704
ChainResidue
CLYS374
CASP379
CLYS386
CMET396
CASP399
CASP459
CGLU461
CTHR486
CLEU487
CGLY489
CCO3701
CZN702
CZN703
CHOH807
CHOH812
CHOH912
CHOH1002

site_idAE6
Number of Residues4
Detailsbinding site for residue 1PE C 705
ChainResidue
CTYR103
CGLU316
CGLN319
CLYS320

site_idAE7
Number of Residues6
Detailsbinding site for residue 1PE C 706
ChainResidue
CTYR103
CASN104
CHIS108
CTYR411
CHOH938
CHOH974

site_idAE8
Number of Residues5
Detailsbinding site for residue SO4 C 707
ChainResidue
CGLU102
CTYR103
CASN104
CHOH831
CHOH947

site_idAE9
Number of Residues6
Detailsbinding site for residue SO4 C 708
ChainResidue
CALA388
CPRO389
CGLY390
CSER391
CMET392
CHOH804

site_idAF1
Number of Residues5
Detailsbinding site for residue SO4 C 709
ChainResidue
CMET392
CLEU492
CPHE583
CHOH927
DLYS552

site_idAF2
Number of Residues7
Detailsbinding site for residue SO4 C 710
ChainResidue
CILE529
CILE530
CASN531
CGLU532
CHOH820
DTYR499
DHOH957

site_idAF3
Number of Residues8
Detailsbinding site for residue SO4 C 711
ChainResidue
CARG463
CGLN546
CILE547
CSER548
CVAL551
CSER554
CVAL557
CHOH814

site_idAF4
Number of Residues7
Detailsbinding site for residue CO3 D 701
ChainResidue
DLYS374
DALA460
DGLU461
DGLY462
DARG463
DLEU487
D4ZN704

site_idAF5
Number of Residues6
Detailsbinding site for residue ZN D 702
ChainResidue
DLYS374
DASP379
DASP399
DGLU461
DZN703
D4ZN704

site_idAF6
Number of Residues5
Detailsbinding site for residue ZN D 703
ChainResidue
DASP379
DASP459
DGLU461
DZN702
D4ZN704

site_idAF7
Number of Residues19
Detailsbinding site for residue 4ZN D 704
ChainResidue
DLYS374
DASP379
DLYS386
DMET392
DPHE398
DASP399
DASP459
DGLU461
DARG463
DTHR486
DLEU487
DTHR488
DGLY489
DSER554
DCO3701
DZN702
DZN703
DHOH803
DHOH833

site_idAF8
Number of Residues3
Detailsbinding site for residue 1PE D 705
ChainResidue
DTYR103
DGLU316
DLYS320

site_idAF9
Number of Residues4
Detailsbinding site for residue 1PE D 706
ChainResidue
DTYR103
DASN104
DHIS108
DTYR411

site_idAG1
Number of Residues4
Detailsbinding site for residue SO4 D 707
ChainResidue
DILE101
DGLU102
DTYR103
DASN104

site_idAG2
Number of Residues7
Detailsbinding site for residue CO3 E 701
ChainResidue
ELYS374
EALA460
EGLU461
EGLY462
EARG463
ELEU487
E4ZN704

site_idAG3
Number of Residues6
Detailsbinding site for residue ZN E 702
ChainResidue
ELYS374
EASP379
EASP399
EGLU461
EZN703
E4ZN704

site_idAG4
Number of Residues5
Detailsbinding site for residue ZN E 703
ChainResidue
EASP379
EASP459
EGLU461
EZN702
E4ZN704

site_idAG5
Number of Residues18
Detailsbinding site for residue 4ZN E 704
ChainResidue
ELYS374
EASP379
ELYS386
EMET396
EPHE398
EASP399
EASP459
EALA460
EGLU461
ETHR486
ELEU487
ETHR488
EGLY489
ECO3701
EZN702
EZN703
EHOH963
EHOH1004

site_idAG6
Number of Residues4
Detailsbinding site for residue 1PE E 705
ChainResidue
ETYR103
EGLU316
EGLN319
ELYS320

site_idAG7
Number of Residues3
Detailsbinding site for residue 1PE E 706
ChainResidue
ETYR103
EPHE289
ETYR411

site_idAG8
Number of Residues6
Detailsbinding site for residue SO4 E 707
ChainResidue
DSER435
DLYS436
ESER435
ELYS436
FSER435
FLYS436

site_idAG9
Number of Residues3
Detailsbinding site for residue SO4 E 708
ChainResidue
EGLU102
ETYR103
EASN104

site_idAH1
Number of Residues5
Detailsbinding site for residue SO4 E 709
ChainResidue
EHIS215
ETYR246
EGLU262
ETYR263
EHOH996

site_idAH2
Number of Residues6
Detailsbinding site for residue CO3 F 701
ChainResidue
FLYS374
FALA460
FGLY462
FARG463
FLEU487
F4ZN704

site_idAH3
Number of Residues6
Detailsbinding site for residue ZN F 702
ChainResidue
FLYS374
FASP379
FASP399
FGLU461
FZN703
F4ZN704

site_idAH4
Number of Residues5
Detailsbinding site for residue ZN F 703
ChainResidue
FASP379
FASP459
FGLU461
FZN702
F4ZN704

site_idAH5
Number of Residues15
Detailsbinding site for residue 4ZN F 704
ChainResidue
FLYS374
FASP379
FLYS386
FPHE398
FASP399
FASP459
FGLU461
FTHR486
FLEU487
FTHR488
FGLY489
FCO3701
FZN702
FZN703
FHOH837

site_idAH6
Number of Residues3
Detailsbinding site for residue 1PE F 705
ChainResidue
FTYR103
FHIS108
FTYR411

site_idAH7
Number of Residues6
Detailsbinding site for residue SO4 F 706
ChainResidue
FGLU102
FTYR103
FASN104
FHOH808
FHOH852
FHOH954

site_idAH8
Number of Residues4
Detailsbinding site for residue SO4 F 707
ChainResidue
FHIS215
FTYR246
FGLU262
FHOH811

site_idAH9
Number of Residues8
Detailsbinding site for residue CO3 G 701
ChainResidue
GLYS374
GALA460
GGLU461
GGLY462
GARG463
GLEU487
G4ZN704
GHOH920

site_idAI1
Number of Residues6
Detailsbinding site for residue ZN G 702
ChainResidue
GLYS374
GASP379
GASP399
GGLU461
GZN703
G4ZN704

site_idAI2
Number of Residues5
Detailsbinding site for residue ZN G 703
ChainResidue
GASP379
GASP459
GGLU461
GZN702
G4ZN704

site_idAI3
Number of Residues16
Detailsbinding site for residue 4ZN G 704
ChainResidue
GLYS374
GASP379
GLYS386
GMET396
GASP399
GASP459
GGLU461
GTHR486
GLEU487
GGLY489
GALA577
GCO3701
GZN702
GZN703
GHOH920
GHOH949

site_idAI4
Number of Residues4
Detailsbinding site for residue 1PE G 705
ChainResidue
GTYR103
GASN104
GHIS108
GTYR411

site_idAI5
Number of Residues7
Detailsbinding site for residue 1PE G 706
ChainResidue
ATYR115
AASN122
ATYR270
GTYR115
GASN122
GTYR270
G1PE707

site_idAI6
Number of Residues4
Detailsbinding site for residue 1PE G 707
ChainResidue
AASN122
GASN122
G1PE706
GHOH983

site_idAI7
Number of Residues4
Detailsbinding site for residue SO4 G 708
ChainResidue
GILE101
GGLU102
GTYR103
GASN104

site_idAI8
Number of Residues6
Detailsbinding site for residue SO4 G 709
ChainResidue
GSER435
GLYS436
HSER435
HLYS436
ISER435
ILYS436

site_idAI9
Number of Residues5
Detailsbinding site for residue SO4 G 710
ChainResidue
GGLY126
GLYS218
GLEU219
GSER220
JLYS164

site_idAJ1
Number of Residues6
Detailsbinding site for residue SO4 G 711
ChainResidue
GARG463
GGLN546
GILE547
GSER548
GSER554
GVAL557

site_idAJ2
Number of Residues8
Detailsbinding site for residue CO3 H 701
ChainResidue
HLYS374
HALA460
HGLU461
HGLY462
HARG463
HLEU487
H4ZN704
HHOH944

site_idAJ3
Number of Residues6
Detailsbinding site for residue ZN H 702
ChainResidue
HLYS374
HASP379
HASP399
HGLU461
HZN703
H4ZN704

site_idAJ4
Number of Residues5
Detailsbinding site for residue ZN H 703
ChainResidue
HASP379
HASP459
HGLU461
HZN702
H4ZN704

site_idAJ5
Number of Residues15
Detailsbinding site for residue 4ZN H 704
ChainResidue
HLYS374
HASP379
HLYS386
HMET396
HASP399
HASP459
HGLU461
HTHR486
HLEU487
HTHR488
HGLY489
HCO3701
HZN702
HZN703
HHOH832

site_idAJ6
Number of Residues3
Detailsbinding site for residue 1PE H 705
ChainResidue
HTYR103
HGLU316
HLYS320

site_idAJ7
Number of Residues4
Detailsbinding site for residue 1PE H 706
ChainResidue
B1PE706
HTYR103
HLYS320
HTYR411

site_idAJ8
Number of Residues7
Detailsbinding site for residue CO3 I 701
ChainResidue
ILYS374
IALA460
IGLU461
IGLY462
IARG463
ILEU487
I4ZN704

site_idAJ9
Number of Residues6
Detailsbinding site for residue ZN I 702
ChainResidue
ILYS374
IASP379
IASP399
IGLU461
IZN703
I4ZN704

site_idAK1
Number of Residues5
Detailsbinding site for residue ZN I 703
ChainResidue
IASP379
IASP459
IGLU461
IZN702
I4ZN704

site_idAK2
Number of Residues17
Detailsbinding site for residue 4ZN I 704
ChainResidue
ILYS374
IASP379
ILYS386
IMET392
IMET396
IPHE398
IASP399
IASP459
IGLU461
ITHR486
ILEU487
IGLY489
ICO3701
IZN702
IZN703
IHOH985
IHOH1004

site_idAK3
Number of Residues3
Detailsbinding site for residue 1PE I 705
ChainResidue
ITYR103
IGLU316
ILYS320

site_idAK4
Number of Residues7
Detailsbinding site for residue 1PE I 706
ChainResidue
ITYR103
IASN104
IHIS108
IPHE289
ITYR411
IHOH973
IHOH974

site_idAK5
Number of Residues4
Detailsbinding site for residue SO4 I 707
ChainResidue
IILE101
IGLU102
ITYR103
IASN104

site_idAK6
Number of Residues2
Detailsbinding site for residue SO4 I 708
ChainResidue
IGLY126
ISER220

site_idAK7
Number of Residues7
Detailsbinding site for residue CO3 J 701
ChainResidue
JLYS374
JALA460
JGLU461
JGLY462
JARG463
JLEU487
J4ZN704

site_idAK8
Number of Residues6
Detailsbinding site for residue ZN J 702
ChainResidue
JLYS374
JASP379
JASP399
JGLU461
JZN703
J4ZN704

site_idAK9
Number of Residues6
Detailsbinding site for residue ZN J 703
ChainResidue
JASP379
JLYS386
JASP459
JGLU461
JZN702
J4ZN704

site_idAL1
Number of Residues20
Detailsbinding site for residue 4ZN J 704
ChainResidue
JLYS374
JASP379
JLYS386
JMET392
JMET396
JPHE398
JASP399
JASP459
JGLU461
JTHR486
JLEU487
JTHR488
JGLY489
JCO3701
JZN702
JZN703
JHOH831
JHOH849
JHOH1000
JHOH1050

site_idAL2
Number of Residues5
Detailsbinding site for residue 1PE J 705
ChainResidue
JSER254
LASN449
LLYS451
LASP543
LGLN567

site_idAL3
Number of Residues3
Detailsbinding site for residue 1PE J 706
ChainResidue
JTYR103
JGLU316
JLYS320

site_idAL4
Number of Residues5
Detailsbinding site for residue 1PE J 707
ChainResidue
JTYR103
JASN104
JHIS108
JLYS320
JTYR411

site_idAL5
Number of Residues6
Detailsbinding site for residue SO4 J 708
ChainResidue
JSER435
JLYS436
KSER435
KLYS436
LSER435
LLYS436

site_idAL6
Number of Residues3
Detailsbinding site for residue SO4 J 709
ChainResidue
JILE101
JTYR103
JASN104

site_idAL7
Number of Residues7
Detailsbinding site for residue CO3 K 701
ChainResidue
KLYS374
KALA460
KGLU461
KGLY462
KARG463
KLEU487
K4ZN704

site_idAL8
Number of Residues6
Detailsbinding site for residue ZN K 702
ChainResidue
KLYS374
KASP379
KASP399
KGLU461
KZN703
K4ZN704

site_idAL9
Number of Residues5
Detailsbinding site for residue ZN K 703
ChainResidue
KASP379
KASP459
KGLU461
KZN702
K4ZN704

site_idAM1
Number of Residues16
Detailsbinding site for residue 4ZN K 704
ChainResidue
KLYS374
KASP379
KLYS386
KMET396
KPHE398
KASP399
KASP459
KGLU461
KTHR486
KLEU487
KGLY489
KCO3701
KZN702
KZN703
KHOH943
KHOH1004

site_idAM2
Number of Residues6
Detailsbinding site for residue 1PE K 705
ChainResidue
KTYR103
KGLU316
KGLN319
KLYS320
KSO4707
KHOH1046

site_idAM3
Number of Residues2
Detailsbinding site for residue 1PE K 706
ChainResidue
KTYR103
KTYR411

site_idAM4
Number of Residues5
Detailsbinding site for residue SO4 K 707
ChainResidue
KILE101
KGLU102
KTYR103
KASN104
K1PE705

site_idAM5
Number of Residues3
Detailsbinding site for residue SO4 K 708
ChainResidue
KGLY390
KSER391
KMET392

site_idAM6
Number of Residues7
Detailsbinding site for residue CO3 L 701
ChainResidue
LLYS374
LALA460
LGLU461
LGLY462
LARG463
LLEU487
L4ZN704

site_idAM7
Number of Residues6
Detailsbinding site for residue ZN L 702
ChainResidue
LLYS374
LASP379
LASP399
LGLU461
LZN703
L4ZN704

site_idAM8
Number of Residues6
Detailsbinding site for residue ZN L 703
ChainResidue
LASP379
LLYS386
LASP459
LGLU461
LZN702
L4ZN704

site_idAM9
Number of Residues15
Detailsbinding site for residue 4ZN L 704
ChainResidue
LLYS374
LASP379
LLYS386
LPHE398
LASP399
LASP459
LGLU461
LTHR486
LLEU487
LTHR488
LGLY489
LCO3701
LZN702
LZN703
LHOH859

site_idAN1
Number of Residues7
Detailsbinding site for residue 1PE L 705
ChainResidue
GGLU200
GSER498
GTYR499
LILE529
LILE530
LASN531
LGLU532

site_idAN2
Number of Residues5
Detailsbinding site for residue 1PE L 706
ChainResidue
LTYR103
LASN104
LHIS108
LTYR411
LHOH830

site_idAN3
Number of Residues3
Detailsbinding site for residue SO4 L 707
ChainResidue
LGLU102
LTYR103
LASN104

Functional Information from PROSITE/UniProt
site_idPS00631
Number of Residues8
DetailsCYTOSOL_AP Cytosol aminopeptidase signature. NTDAEGRL
ChainResidueDetails
AASN457-LEU464

223532

PDB entries from 2024-08-07

PDB statisticsPDBj update infoContact PDBjnumon