5C0C
1E6 TCR in complex with HLA-A02 carrying RQFGPDWIVA
Functional Information from GO Data
Chain | GOid | namespace | contents |
B | 0000139 | cellular_component | Golgi membrane |
B | 0001913 | biological_process | T cell mediated cytotoxicity |
B | 0001916 | biological_process | positive regulation of T cell mediated cytotoxicity |
B | 0002237 | biological_process | response to molecule of bacterial origin |
B | 0002376 | biological_process | immune system process |
B | 0002474 | biological_process | antigen processing and presentation of peptide antigen via MHC class I |
B | 0002481 | biological_process | antigen processing and presentation of exogenous protein antigen via MHC class Ib, TAP-dependent |
B | 0002502 | biological_process | peptide antigen assembly with MHC class I protein complex |
B | 0002503 | biological_process | peptide antigen assembly with MHC class II protein complex |
B | 0002726 | biological_process | positive regulation of T cell cytokine production |
B | 0005198 | molecular_function | structural molecule activity |
B | 0005515 | molecular_function | protein binding |
B | 0005576 | cellular_component | extracellular region |
B | 0005615 | cellular_component | extracellular space |
B | 0005765 | cellular_component | lysosomal membrane |
B | 0005783 | cellular_component | endoplasmic reticulum |
B | 0005788 | cellular_component | endoplasmic reticulum lumen |
B | 0005794 | cellular_component | Golgi apparatus |
B | 0005829 | cellular_component | cytosol |
B | 0005886 | cellular_component | plasma membrane |
B | 0005925 | cellular_component | focal adhesion |
B | 0006826 | biological_process | iron ion transport |
B | 0006879 | biological_process | intracellular iron ion homeostasis |
B | 0006955 | biological_process | immune response |
B | 0007608 | biological_process | sensory perception of smell |
B | 0007611 | biological_process | learning or memory |
B | 0009897 | cellular_component | external side of plasma membrane |
B | 0009986 | cellular_component | cell surface |
B | 0010038 | biological_process | response to metal ion |
B | 0010977 | biological_process | negative regulation of neuron projection development |
B | 0012507 | cellular_component | ER to Golgi transport vesicle membrane |
B | 0016020 | cellular_component | membrane |
B | 0019885 | biological_process | antigen processing and presentation of endogenous peptide antigen via MHC class I |
B | 0019886 | biological_process | antigen processing and presentation of exogenous peptide antigen via MHC class II |
B | 0023026 | molecular_function | MHC class II protein complex binding |
B | 0030670 | cellular_component | phagocytic vesicle membrane |
B | 0031901 | cellular_component | early endosome membrane |
B | 0031902 | cellular_component | late endosome membrane |
B | 0031905 | cellular_component | early endosome lumen |
B | 0033077 | biological_process | T cell differentiation in thymus |
B | 0033572 | biological_process | transferrin transport |
B | 0034756 | biological_process | regulation of iron ion transport |
B | 0034757 | biological_process | negative regulation of iron ion transport |
B | 0035580 | cellular_component | specific granule lumen |
B | 0042026 | biological_process | protein refolding |
B | 0042605 | molecular_function | peptide antigen binding |
B | 0042612 | cellular_component | MHC class I protein complex |
B | 0042613 | cellular_component | MHC class II protein complex |
B | 0042802 | molecular_function | identical protein binding |
B | 0042803 | molecular_function | protein homodimerization activity |
B | 0042824 | cellular_component | MHC class I peptide loading complex |
B | 0045646 | biological_process | regulation of erythrocyte differentiation |
B | 0048260 | biological_process | positive regulation of receptor-mediated endocytosis |
B | 0048261 | biological_process | negative regulation of receptor-mediated endocytosis |
B | 0050680 | biological_process | negative regulation of epithelial cell proliferation |
B | 0050768 | biological_process | negative regulation of neurogenesis |
B | 0050778 | biological_process | positive regulation of immune response |
B | 0050870 | biological_process | positive regulation of T cell activation |
B | 0051289 | biological_process | protein homotetramerization |
B | 0055038 | cellular_component | recycling endosome membrane |
B | 0060586 | biological_process | multicellular organismal-level iron ion homeostasis |
B | 0070062 | cellular_component | extracellular exosome |
B | 0071281 | biological_process | cellular response to iron ion |
B | 0071283 | biological_process | cellular response to iron(III) ion |
B | 0071316 | biological_process | cellular response to nicotine |
B | 1904724 | cellular_component | tertiary granule lumen |
B | 1990000 | biological_process | amyloid fibril formation |
B | 1990712 | cellular_component | HFE-transferrin receptor complex |
B | 2000774 | biological_process | positive regulation of cellular senescence |
B | 2000978 | biological_process | negative regulation of forebrain neuron differentiation |
D | 0002250 | biological_process | adaptive immune response |
D | 0002376 | biological_process | immune system process |
D | 0005886 | cellular_component | plasma membrane |
D | 0016020 | cellular_component | membrane |
D | 0042101 | cellular_component | T cell receptor complex |
D | 0042605 | molecular_function | peptide antigen binding |
G | 0000139 | cellular_component | Golgi membrane |
G | 0001913 | biological_process | T cell mediated cytotoxicity |
G | 0001916 | biological_process | positive regulation of T cell mediated cytotoxicity |
G | 0002237 | biological_process | response to molecule of bacterial origin |
G | 0002376 | biological_process | immune system process |
G | 0002474 | biological_process | antigen processing and presentation of peptide antigen via MHC class I |
G | 0002481 | biological_process | antigen processing and presentation of exogenous protein antigen via MHC class Ib, TAP-dependent |
G | 0002502 | biological_process | peptide antigen assembly with MHC class I protein complex |
G | 0002503 | biological_process | peptide antigen assembly with MHC class II protein complex |
G | 0002726 | biological_process | positive regulation of T cell cytokine production |
G | 0005198 | molecular_function | structural molecule activity |
G | 0005515 | molecular_function | protein binding |
G | 0005576 | cellular_component | extracellular region |
G | 0005615 | cellular_component | extracellular space |
G | 0005765 | cellular_component | lysosomal membrane |
G | 0005783 | cellular_component | endoplasmic reticulum |
G | 0005788 | cellular_component | endoplasmic reticulum lumen |
G | 0005794 | cellular_component | Golgi apparatus |
G | 0005829 | cellular_component | cytosol |
G | 0005886 | cellular_component | plasma membrane |
G | 0005925 | cellular_component | focal adhesion |
G | 0006826 | biological_process | iron ion transport |
G | 0006879 | biological_process | intracellular iron ion homeostasis |
G | 0006955 | biological_process | immune response |
G | 0007608 | biological_process | sensory perception of smell |
G | 0007611 | biological_process | learning or memory |
G | 0009897 | cellular_component | external side of plasma membrane |
G | 0009986 | cellular_component | cell surface |
G | 0010038 | biological_process | response to metal ion |
G | 0010977 | biological_process | negative regulation of neuron projection development |
G | 0012507 | cellular_component | ER to Golgi transport vesicle membrane |
G | 0016020 | cellular_component | membrane |
G | 0019885 | biological_process | antigen processing and presentation of endogenous peptide antigen via MHC class I |
G | 0019886 | biological_process | antigen processing and presentation of exogenous peptide antigen via MHC class II |
G | 0023026 | molecular_function | MHC class II protein complex binding |
G | 0030670 | cellular_component | phagocytic vesicle membrane |
G | 0031901 | cellular_component | early endosome membrane |
G | 0031902 | cellular_component | late endosome membrane |
G | 0031905 | cellular_component | early endosome lumen |
G | 0033077 | biological_process | T cell differentiation in thymus |
G | 0033572 | biological_process | transferrin transport |
G | 0034756 | biological_process | regulation of iron ion transport |
G | 0034757 | biological_process | negative regulation of iron ion transport |
G | 0035580 | cellular_component | specific granule lumen |
G | 0042026 | biological_process | protein refolding |
G | 0042605 | molecular_function | peptide antigen binding |
G | 0042612 | cellular_component | MHC class I protein complex |
G | 0042613 | cellular_component | MHC class II protein complex |
G | 0042802 | molecular_function | identical protein binding |
G | 0042803 | molecular_function | protein homodimerization activity |
G | 0042824 | cellular_component | MHC class I peptide loading complex |
G | 0045646 | biological_process | regulation of erythrocyte differentiation |
G | 0048260 | biological_process | positive regulation of receptor-mediated endocytosis |
G | 0048261 | biological_process | negative regulation of receptor-mediated endocytosis |
G | 0050680 | biological_process | negative regulation of epithelial cell proliferation |
G | 0050768 | biological_process | negative regulation of neurogenesis |
G | 0050778 | biological_process | positive regulation of immune response |
G | 0050870 | biological_process | positive regulation of T cell activation |
G | 0051289 | biological_process | protein homotetramerization |
G | 0055038 | cellular_component | recycling endosome membrane |
G | 0060586 | biological_process | multicellular organismal-level iron ion homeostasis |
G | 0070062 | cellular_component | extracellular exosome |
G | 0071281 | biological_process | cellular response to iron ion |
G | 0071283 | biological_process | cellular response to iron(III) ion |
G | 0071316 | biological_process | cellular response to nicotine |
G | 1904724 | cellular_component | tertiary granule lumen |
G | 1990000 | biological_process | amyloid fibril formation |
G | 1990712 | cellular_component | HFE-transferrin receptor complex |
G | 2000774 | biological_process | positive regulation of cellular senescence |
G | 2000978 | biological_process | negative regulation of forebrain neuron differentiation |
I | 0002250 | biological_process | adaptive immune response |
I | 0002376 | biological_process | immune system process |
I | 0005886 | cellular_component | plasma membrane |
I | 0016020 | cellular_component | membrane |
I | 0042101 | cellular_component | T cell receptor complex |
I | 0042605 | molecular_function | peptide antigen binding |
Functional Information from PDB Data
site_id | AC1 |
Number of Residues | 7 |
Details | binding site for residue EDO A 301 |
Chain | Residue |
A | PHE36 |
A | ASP37 |
A | ALA40 |
A | SER42 |
A | GLN43 |
A | ARG44 |
A | HOH413 |
site_id | AC2 |
Number of Residues | 2 |
Details | binding site for residue EDO A 302 |
Chain | Residue |
A | PRO20 |
A | HOH432 |
site_id | AC3 |
Number of Residues | 7 |
Details | binding site for residue EDO A 303 |
Chain | Residue |
A | ARG44 |
A | ASP61 |
A | THR64 |
A | ARG65 |
A | LYS68 |
J | EDO303 |
J | HOH416 |
site_id | AC4 |
Number of Residues | 5 |
Details | binding site for residue PG4 A 304 |
Chain | Residue |
A | ASP122 |
A | TYR123 |
A | THR134 |
A | ALA136 |
A | HOH448 |
site_id | AC5 |
Number of Residues | 5 |
Details | binding site for residue SO4 A 305 |
Chain | Residue |
A | ARG17 |
A | GLY18 |
A | HOH428 |
E | ARG22 |
E | PHE74 |
site_id | AC6 |
Number of Residues | 7 |
Details | binding site for residue EDO B 301 |
Chain | Residue |
A | ARG234 |
A | GLN242 |
B | TYR10 |
B | SER11 |
B | HIS13 |
B | PRO14 |
B | HOH413 |
site_id | AC7 |
Number of Residues | 4 |
Details | binding site for residue EDO B 302 |
Chain | Residue |
A | VAL12 |
B | ASP34 |
B | GOL303 |
B | HOH424 |
site_id | AC8 |
Number of Residues | 6 |
Details | binding site for residue GOL B 303 |
Chain | Residue |
A | ILE23 |
B | SER33 |
B | ASP34 |
B | ILE35 |
B | EDO302 |
B | HOH427 |
site_id | AC9 |
Number of Residues | 4 |
Details | binding site for residue EDO D 301 |
Chain | Residue |
D | GLY59 |
D | ARG60 |
D | ARG77 |
D | ASP78 |
site_id | AD1 |
Number of Residues | 6 |
Details | binding site for residue EDO D 302 |
Chain | Residue |
D | ASP112 |
D | ILE113 |
D | ASP140 |
D | SER141 |
D | GLN142 |
D | HOH416 |
site_id | AD2 |
Number of Residues | 3 |
Details | binding site for residue EDO D 303 |
Chain | Residue |
D | GLY59 |
D | ARG60 |
D | PHE61 |
site_id | AD3 |
Number of Residues | 5 |
Details | binding site for residue EDO E 301 |
Chain | Residue |
D | ARG92 |
D | TYR97 |
D | LEU99 |
E | LEU100 |
E | ASN103 |
site_id | AD4 |
Number of Residues | 8 |
Details | binding site for residue EDO E 302 |
Chain | Residue |
E | ASP30 |
E | TYR31 |
E | LEU96 |
E | TRP97 |
E | GLU98 |
H | ILE8 |
H | VAL9 |
H | HOH104 |
site_id | AD5 |
Number of Residues | 3 |
Details | binding site for residue EDO E 303 |
Chain | Residue |
E | GLN235 |
E | VAL237 |
E | HOH424 |
site_id | AD6 |
Number of Residues | 3 |
Details | binding site for residue EDO E 304 |
Chain | Residue |
E | PRO8 |
E | ARG9 |
E | HOH405 |
site_id | AD7 |
Number of Residues | 6 |
Details | binding site for residue EDO E 305 |
Chain | Residue |
E | LEU116 |
E | GLU117 |
E | ASP118 |
E | ASN121 |
E | TYR153 |
E | ASP187 |
site_id | AD8 |
Number of Residues | 2 |
Details | binding site for residue EDO E 306 |
Chain | Residue |
E | HIS29 |
E | HOH403 |
site_id | AD9 |
Number of Residues | 6 |
Details | binding site for residue EDO F 301 |
Chain | Residue |
F | ARG44 |
F | ASP61 |
F | THR64 |
F | LYS68 |
F | HOH428 |
F | HOH430 |
site_id | AE1 |
Number of Residues | 6 |
Details | binding site for residue EDO F 302 |
Chain | Residue |
F | ASP122 |
F | ILE124 |
F | ALA125 |
F | THR134 |
F | ALA136 |
F | HOH461 |
site_id | AE2 |
Number of Residues | 1 |
Details | binding site for residue EDO F 303 |
Chain | Residue |
F | ARG21 |
site_id | AE3 |
Number of Residues | 5 |
Details | binding site for residue EDO F 304 |
Chain | Residue |
F | ASP122 |
F | HOH424 |
F | TYR85 |
F | TYR118 |
F | LYS121 |
site_id | AE4 |
Number of Residues | 3 |
Details | binding site for residue EDO F 305 |
Chain | Residue |
F | TYR84 |
F | ALA139 |
F | THR142 |
site_id | AE5 |
Number of Residues | 6 |
Details | binding site for residue EDO F 306 |
Chain | Residue |
F | GLU19 |
F | PRO20 |
F | SER71 |
F | GLN72 |
F | ARG75 |
F | HOH447 |
site_id | AE6 |
Number of Residues | 5 |
Details | binding site for residue EDO F 307 |
Chain | Residue |
F | ARG44 |
F | MET45 |
F | TRP60 |
F | MET138 |
F | GLN141 |
site_id | AE7 |
Number of Residues | 6 |
Details | binding site for residue GOL F 308 |
Chain | Residue |
F | PRO50 |
F | GLU53 |
F | GLN54 |
F | LYS127 |
F | SER132 |
F | TRP133 |
site_id | AE8 |
Number of Residues | 6 |
Details | binding site for residue GOL F 309 |
Chain | Residue |
F | SER4 |
F | ARG6 |
F | PHE8 |
F | TYR27 |
F | ASP29 |
F | HOH496 |
site_id | AE9 |
Number of Residues | 8 |
Details | binding site for residue EDO G 101 |
Chain | Residue |
F | LEU206 |
F | ARG234 |
F | GLN242 |
G | TYR10 |
G | SER11 |
G | HIS13 |
G | PRO14 |
G | HOH217 |
site_id | AF1 |
Number of Residues | 3 |
Details | binding site for residue EDO G 102 |
Chain | Residue |
F | HOH510 |
G | SER33 |
G | ASP34 |
site_id | AF2 |
Number of Residues | 4 |
Details | binding site for residue EDO I 301 |
Chain | Residue |
D | ASP66 |
D | TYR71 |
I | LEU11 |
I | SER12 |
site_id | AF3 |
Number of Residues | 4 |
Details | binding site for residue EDO I 302 |
Chain | Residue |
D | ARG77 |
I | ARG77 |
I | HOH422 |
I | HOH444 |
site_id | AF4 |
Number of Residues | 5 |
Details | binding site for residue EDO I 303 |
Chain | Residue |
I | GLU3 |
I | GLU5 |
I | THR24 |
I | TYR25 |
I | SER26 |
site_id | AF5 |
Number of Residues | 12 |
Details | binding site for residue PG4 I 304 |
Chain | Residue |
D | PRO10 |
D | SER12 |
D | VAL13 |
D | ILE18 |
D | VAL19 |
D | SER20 |
I | GLN64 |
I | ASP66 |
I | SER69 |
I | TYR71 |
I | HOH429 |
I | HOH432 |
site_id | AF6 |
Number of Residues | 5 |
Details | binding site for residue EDO J 301 |
Chain | Residue |
I | ARG92 |
I | TYR97 |
I | LEU99 |
J | LEU100 |
J | ASN103 |
site_id | AF7 |
Number of Residues | 6 |
Details | binding site for residue EDO J 302 |
Chain | Residue |
J | LEU116 |
J | GLU117 |
J | ASP118 |
J | ASN121 |
J | TYR153 |
J | ASP187 |
site_id | AF8 |
Number of Residues | 5 |
Details | binding site for residue EDO J 303 |
Chain | Residue |
A | EDO303 |
J | PRO54 |
J | ILE55 |
J | ASP56 |
J | ASP57 |
site_id | AF9 |
Number of Residues | 3 |
Details | binding site for residue EDO J 304 |
Chain | Residue |
J | GLY3 |
J | VAL4 |
J | PHE107 |
site_id | AG1 |
Number of Residues | 3 |
Details | binding site for residue EDO J 305 |
Chain | Residue |
J | VAL168 |
J | HIS169 |
J | SER170 |
site_id | AG2 |
Number of Residues | 2 |
Details | binding site for residue EDO J 306 |
Chain | Residue |
J | ARG85 |
J | LYS102 |
site_id | AG3 |
Number of Residues | 8 |
Details | binding site for residue EDO J 307 |
Chain | Residue |
C | ILE8 |
C | VAL9 |
C | HOH105 |
J | ASP30 |
J | TYR31 |
J | LEU96 |
J | TRP97 |
J | GLU98 |
site_id | AG4 |
Number of Residues | 5 |
Details | binding site for residue SO4 J 308 |
Chain | Residue |
F | ARG17 |
F | GLY18 |
J | ARG22 |
J | PHE74 |
J | HOH486 |
site_id | AG5 |
Number of Residues | 5 |
Details | binding site for residue SO4 J 309 |
Chain | Residue |
A | HIS151 |
A | GLN155 |
A | HOH435 |
J | ALA101 |
J | LYS102 |
site_id | AG6 |
Number of Residues | 6 |
Details | binding site for residue SO4 J 310 |
Chain | Residue |
G | ARG45 |
G | GLU47 |
G | HOH205 |
J | GLU221 |
J | LYS231 |
J | HOH454 |
Functional Information from PROSITE/UniProt
site_id | PS00290 |
Number of Residues | 7 |
Details | IG_MHC Immunoglobulins and major histocompatibility complex proteins signature. YACRVNH |
Chain | Residue | Details |
B | TYR78-HIS84 | |
A | TYR257-HIS263 |
Functional Information from SwissProt/UniProt
site_id | SWS_FT_FI1 |
Number of Residues | 172 |
Details | Domain: {"description":"Ig-like C1-type","evidences":[{"evidenceCode":"ECO:0000255"}]} |
Chain | Residue | Details |
site_id | SWS_FT_FI2 |
Number of Residues | 178 |
Details | Region: {"description":"Alpha-1","evidences":[{"evidenceCode":"ECO:0000255"}]} |
Chain | Residue | Details |
site_id | SWS_FT_FI3 |
Number of Residues | 182 |
Details | Region: {"description":"Alpha-2","evidences":[{"evidenceCode":"ECO:0000255"}]} |
Chain | Residue | Details |
site_id | SWS_FT_FI4 |
Number of Residues | 182 |
Details | Region: {"description":"Alpha-3","evidences":[{"evidenceCode":"ECO:0000255"}]} |
Chain | Residue | Details |
site_id | SWS_FT_FI5 |
Number of Residues | 12 |
Details | Binding site: {"evidences":[{"source":"PubMed","id":"21943705","evidenceCode":"ECO:0000269"}]} |
Chain | Residue | Details |
site_id | SWS_FT_FI6 |
Number of Residues | 4 |
Details | Binding site: {"evidences":[{"source":"PubMed","id":"21543847","evidenceCode":"ECO:0000269"}]} |
Chain | Residue | Details |
site_id | SWS_FT_FI7 |
Number of Residues | 2 |
Details | Modified residue: {"description":"Sulfotyrosine","evidences":[{"evidenceCode":"ECO:0000255"}]} |
Chain | Residue | Details |
site_id | SWS_FT_FI8 |
Number of Residues | 2 |
Details | Glycosylation: {"description":"N-linked (GlcNAc...) asparagine","evidences":[{"source":"PubMed","id":"19159218","evidenceCode":"ECO:0000269"}]} |
Chain | Residue | Details |
site_id | SWS_FT_FI9 |
Number of Residues | 176 |
Details | Domain: {"description":"Ig-like C1-type"} |
Chain | Residue | Details |
site_id | SWS_FT_FI10 |
Number of Residues | 2 |
Details | Modified residue: {"description":"Pyrrolidone carboxylic acid; in form pI 5.3","evidences":[{"source":"PubMed","id":"7554280","evidenceCode":"ECO:0000269"}]} |
Chain | Residue | Details |
site_id | SWS_FT_FI11 |
Number of Residues | 2 |
Details | Glycosylation: {"description":"N-linked (Glc) (glycation) isoleucine; in hemodialysis-associated amyloidosis","evidences":[{"source":"PubMed","id":"7918443","evidenceCode":"ECO:0000269"}]} |
Chain | Residue | Details |
site_id | SWS_FT_FI12 |
Number of Residues | 12 |
Details | Glycosylation: {"description":"N-linked (Glc) (glycation) lysine; in vitro","evidences":[{"source":"PubMed","id":"7918443","evidenceCode":"ECO:0000269"}]} |
Chain | Residue | Details |
site_id | SWS_FT_FI13 |
Number of Residues | 4 |
Details | Glycosylation: {"description":"N-linked (GlcNAc...) asparagine","evidences":[{"evidenceCode":"ECO:0000255"}]} |
Chain | Residue | Details |
site_id | SWS_FT_FI14 |
Number of Residues | 4 |
Details | Glycosylation: {"description":"N-linked (GlcNAc...) asparagine","evidences":[{"source":"PROSITE-ProRule","id":"PRU00498","evidenceCode":"ECO:0000255"},{"source":"PubMed","id":"19349973","evidenceCode":"ECO:0000269"}]} |
Chain | Residue | Details |
site_id | SWS_FT_FI15 |
Number of Residues | 4 |
Details | Glycosylation: {"description":"N-linked (GlcNAc...) asparagine","evidences":[{"source":"PROSITE-ProRule","id":"PRU00498","evidenceCode":"ECO:0000255"}]} |
Chain | Residue | Details |
site_id | SWS_FT_FI16 |
Number of Residues | 186 |
Details | Domain: {"description":"Ig-like","evidences":[{"source":"PROSITE-ProRule","id":"PRU00114","evidenceCode":"ECO:0000255"}]} |
Chain | Residue | Details |
site_id | SWS_FT_FI17 |
Number of Residues | 218 |
Details | Domain: {"description":"Ig-like C1-type","evidences":[{"source":"PROSITE-ProRule","id":"PRU00114","evidenceCode":"ECO:0000255"}]} |
Chain | Residue | Details |