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5BVG

Selenium incorporated nitrogenase MoFe-protein (Av1-Se2B) from A. vinelandii

Functional Information from GO Data
ChainGOidnamespacecontents
A0005524molecular_functionATP binding
A0009399biological_processnitrogen fixation
A0016163molecular_functionnitrogenase activity
A0016491molecular_functionoxidoreductase activity
A0016612cellular_componentmolybdenum-iron nitrogenase complex
A0046872molecular_functionmetal ion binding
A0051536molecular_functioniron-sulfur cluster binding
B0005524molecular_functionATP binding
B0009399biological_processnitrogen fixation
B0016163molecular_functionnitrogenase activity
B0016491molecular_functionoxidoreductase activity
B0016612cellular_componentmolybdenum-iron nitrogenase complex
B0046872molecular_functionmetal ion binding
B0051536molecular_functioniron-sulfur cluster binding
C0005524molecular_functionATP binding
C0009399biological_processnitrogen fixation
C0016163molecular_functionnitrogenase activity
C0016491molecular_functionoxidoreductase activity
C0016612cellular_componentmolybdenum-iron nitrogenase complex
C0046872molecular_functionmetal ion binding
C0051536molecular_functioniron-sulfur cluster binding
D0005524molecular_functionATP binding
D0009399biological_processnitrogen fixation
D0016163molecular_functionnitrogenase activity
D0016491molecular_functionoxidoreductase activity
D0016612cellular_componentmolybdenum-iron nitrogenase complex
D0046872molecular_functionmetal ion binding
D0051536molecular_functioniron-sulfur cluster binding
Functional Information from PDB Data
site_idAC1
Number of Residues16
Detailsbinding site for residue HCA A 501
ChainResidue
AALA65
AHOH663
AHOH681
AHOH709
AHOH745
AHOH775
BHOH710
BHOH814
AGLN191
AGLY424
AILE425
AHIS442
AICG502
AHOH604
AHOH637
AHOH660

site_idAC2
Number of Residues11
Detailsbinding site for residue ICG A 502
ChainResidue
AVAL70
AARG96
AHIS195
ATYR229
ACYS275
AGLY356
AGLY357
AARG359
APHE381
AHIS442
AHCA501

site_idAC3
Number of Residues2
Detailsbinding site for residue IMD A 503
ChainResidue
ATRP294
AHOH710

site_idAC4
Number of Residues5
Detailsbinding site for residue CL A 504
ChainResidue
AARG93
ATHR111
BPHE450
BSE605
BHOH1033

site_idAC5
Number of Residues13
Detailsbinding site for residue CLF A 505
ChainResidue
ACYS62
ATYR64
AGLY87
ACYS88
ATYR91
ACYS154
AGLY185
BCYS70
BSER92
BCYS95
BTYR98
BCYS153
BSER188

site_idAC6
Number of Residues5
Detailsbinding site for residue IMD B 601
ChainResidue
BLEU253
BASP256
BGLY275
BTHR276
BGLU280

site_idAC7
Number of Residues5
Detailsbinding site for residue IMD B 602
ChainResidue
BSER482
BTHR483
BGLN492
BTHR496
BHOH753

site_idAC8
Number of Residues5
Detailsbinding site for residue IMD B 603
ChainResidue
AGLY157
BGLU120
BALA123
CGLN41
CLYS44

site_idAC9
Number of Residues6
Detailsbinding site for residue FE2 B 604
ChainResidue
BASP353
BASP357
BHOH789
DARG108
DGLU109
DHOH910

site_idAD1
Number of Residues5
Detailsbinding site for residue SE B 605
ChainResidue
AMET112
ACL504
BASN65
BARG453
BHOH800

site_idAD2
Number of Residues6
Detailsbinding site for residue FE2 B 606
ChainResidue
BARG108
BGLU109
BHOH929
DASP353
DASP357
DHOH798

site_idAD3
Number of Residues16
Detailsbinding site for residue HCA C 501
ChainResidue
CALA65
CGLN191
CGLY424
CILE425
CHIS442
CICG502
CHOH618
CHOH634
CHOH681
CHOH686
CHOH700
CHOH764
CHOH788
CHOH804
DHOH711
DHOH772

site_idAD4
Number of Residues11
Detailsbinding site for residue ICG C 502
ChainResidue
CCYS275
CGLY356
CGLY357
CARG359
CPHE381
CHIS442
CHCA501
CVAL70
CARG96
CHIS195
CTYR229

site_idAD5
Number of Residues2
Detailsbinding site for residue IMD C 503
ChainResidue
CTRP294
CHOH830

site_idAD6
Number of Residues6
Detailsbinding site for residue CL C 504
ChainResidue
CARG93
CTHR111
DPHE450
DARG453
DSE604
DHOH1049

site_idAD7
Number of Residues7
Detailsbinding site for residue IMD C 505
ChainResidue
CGLY406
CGLU410
CILE430
CHOH757
CHOH848
CHOH864
DPHE269

site_idAD8
Number of Residues13
Detailsbinding site for residue CLF C 506
ChainResidue
CCYS62
CTYR64
CGLY87
CCYS88
CTYR91
CCYS154
CGLY185
DCYS70
DSER92
DCYS95
DTYR98
DCYS153
DSER188

site_idAD9
Number of Residues5
Detailsbinding site for residue IMD D 601
ChainResidue
DSER482
DTHR483
DGLN492
DTHR496
DHOH723

site_idAE1
Number of Residues6
Detailsbinding site for residue IMD D 602
ChainResidue
DLEU253
DASP256
DGLY275
DTHR276
DGLU280
DHOH841

site_idAE2
Number of Residues5
Detailsbinding site for residue IMD D 603
ChainResidue
AGLN41
ALYS44
CGLY157
DGLU120
DALA123

site_idAE3
Number of Residues5
Detailsbinding site for residue SE D 604
ChainResidue
CMET112
CCL504
DASN65
DARG453
DHOH896

Functional Information from PROSITE/UniProt
site_idPS00090
Number of Residues15
DetailsNITROGENASE_1_2 Nitrogenases component 1 alpha and beta subunits signature 2. TTCmaeviGDDLnAF
ChainResidueDetails
BTHR151-PHE165
ASER152-VAL166

site_idPS00699
Number of Residues8
DetailsNITROGENASE_1_1 Nitrogenases component 1 alpha and beta subunits signature 1. YVHGSQGC
ChainResidueDetails
BTYR88-CYS95
AILE81-CYS88

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues8
DetailsBINDING:
ChainResidueDetails
BCYS70
CHIS442
BCYS95
BCYS153
BSER188
DCYS70
DCYS95
DCYS153
DSER188
CCYS275

Catalytic Information from CSA
site_idMCSA1
Number of Residues2
DetailsM-CSA 212
ChainResidueDetails
BCYS153metal ligand
BVAL157polar interaction, single electron acceptor, single electron donor, single electron relay
AARG96activator, hydrogen bond donor
AHIS195activator, polar interaction

site_idMCSA2
Number of Residues2
DetailsM-CSA 212
ChainResidueDetails
DCYS153metal ligand
DVAL157polar interaction, single electron acceptor, single electron donor, single electron relay
CARG96activator, hydrogen bond donor
CHIS195activator, polar interaction

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PDB entries from 2024-10-30

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