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5B8D

Crystal structure of a low occupancy fragment candidate (N-(4-Methyl-1,3-thiazol-2-yl)propanamide) bound adjacent to the ubiquitin binding pocket of the HDAC6 zinc-finger domain

Functional Information from GO Data
ChainGOidnamespacecontents
A0008270molecular_functionzinc ion binding
Functional Information from PDB Data
site_idAC1
Number of Residues4
Detailsbinding site for residue ZN A 1301
ChainResidue
ACYS1145
ACYS1148
AHIS1164
AHIS1170

site_idAC2
Number of Residues4
Detailsbinding site for residue ZN A 1302
ChainResidue
ACYS1133
ACYS1136
ACYS1153
AHIS1160

site_idAC3
Number of Residues4
Detailsbinding site for residue ZN A 1303
ChainResidue
AHIS1115
ACYS1183
ACYS1186
ACYS1113

site_idAC4
Number of Residues7
Detailsbinding site for residue FMT A 1304
ChainResidue
ATRP1143
AGLY1154
AARG1155
ALEU1162
ATYR1184
AHOH1409
AHOH1417

site_idAC5
Number of Residues5
Detailsbinding site for residue FMT A 1305
ChainResidue
ATRP1143
ATRP1182
ATYR1189
A6T41306
AHOH1445

site_idAC6
Number of Residues8
Detailsbinding site for residue 6T4 A 1306
ChainResidue
AGLU1141
AASN1142
ATRP1143
ASER1175
AASP1178
ATYR1189
AASN1200
AFMT1305

site_idAC7
Number of Residues5
Detailsbinding site for residue NA A 1343
ChainResidue
ATYR1156
AILE1157
AHOH1449
AHOH1469
AHOH1470

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues98
DetailsZN_FING: UBP-type => ECO:0000255|PROSITE-ProRule:PRU00502
ChainResidueDetails
APRO1111-GLU1209

site_idSWS_FT_FI2
Number of Residues12
DetailsBINDING: BINDING => ECO:0000255|PROSITE-ProRule:PRU00502, ECO:0000269|Ref.42, ECO:0000269|Ref.43
ChainResidueDetails
ACYS1113
AHIS1170
ACYS1183
ACYS1186
AHIS1115
ACYS1133
ACYS1136
ACYS1145
ACYS1148
ACYS1153
AHIS1160
AHIS1164

237992

PDB entries from 2025-06-25

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