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5B2R

Crystal structure of the Streptococcus pyogenes Cas9 VQR variant in complex with sgRNA and target DNA (TGA PAM)

Functional Information from GO Data
ChainGOidnamespacecontents
B0003677molecular_functionDNA binding
B0003723molecular_functionRNA binding
B0004519molecular_functionendonuclease activity
B0004520molecular_functionDNA endonuclease activity
B0004527molecular_functionexonuclease activity
B0008408molecular_function3'-5' exonuclease activity
B0043571biological_processmaintenance of CRISPR repeat elements
B0046872molecular_functionmetal ion binding
B0051607biological_processdefense response to virus
Functional Information from PDB Data
site_idAC1
Number of Residues7
Detailsbinding site for residue K A 101
ChainResidue
AA65
AU66
AHOH219
AHOH331
AHOH364
BTHR1102
BHOH1749

site_idAC2
Number of Residues6
Detailsbinding site for residue K A 102
ChainResidue
BGLN1350
BHOH1803
BHOH1871
BHOH1981
AA68
AHOH311

site_idAC3
Number of Residues6
Detailsbinding site for residue K A 103
ChainResidue
AG21
AHOH260
AHOH291
AHOH344
AHOH385
AHOH397

site_idAC4
Number of Residues6
Detailsbinding site for residue MG A 104
ChainResidue
AU50
AHOH289
AHOH305
AHOH316
AHOH356
AHOH371

site_idAC5
Number of Residues8
Detailsbinding site for residue MG A 105
ChainResidue
AG21
AU22
AHOH203
AHOH350
AHOH369
AHOH385
AHOH386
BHOH1964

site_idAC6
Number of Residues6
Detailsbinding site for residue EDO A 106
ChainResidue
AU63
AU64
AHOH205
AHOH283
AHOH337
BARG461

site_idAC7
Number of Residues4
Detailsbinding site for residue ACT A 107
ChainResidue
AA65
AU66
AC67
BARG1171

site_idAC8
Number of Residues3
Detailsbinding site for residue K A 108
ChainResidue
AU22
BASP364
BGLY365

site_idAC9
Number of Residues5
Detailsbinding site for residue K B 1401
ChainResidue
BLEU623
BTHR624
BPHE626
BTYR656
CHOH134

site_idAD1
Number of Residues6
Detailsbinding site for residue K B 1402
ChainResidue
BGLU584
BARG586
BASN588
BHOH1501
BHOH1854
CHOH146

site_idAD2
Number of Residues6
Detailsbinding site for residue K B 1403
ChainResidue
BGLY361
BTYR362
BGLY365
BGLY366
BALA367
BHOH1909

site_idAD3
Number of Residues4
Detailsbinding site for residue K B 1404
ChainResidue
BILE226
BLEU229
BGLU232
BHOH1934

site_idAD4
Number of Residues3
Detailsbinding site for residue K B 1405
ChainResidue
BGLU108
BLYS111
BHOH1962

site_idAD5
Number of Residues6
Detailsbinding site for residue K B 1406
ChainResidue
AHOH219
AHOH296
BGLU57
BHOH1861
BHOH1923
BHOH1927

site_idAD6
Number of Residues4
Detailsbinding site for residue K B 1407
ChainResidue
BASP576
BSER577
BALA640
BPHE643

site_idAD7
Number of Residues6
Detailsbinding site for residue MG B 1408
ChainResidue
AHOH215
AHOH229
AHOH377
BHOH1683
BHOH1918
BHOH1968

site_idAD8
Number of Residues6
Detailsbinding site for residue EDO B 1409
ChainResidue
BILE1168
BMET1169
BARG1171
BSER1172
BHOH1612
BHOH1748

site_idAD9
Number of Residues5
Detailsbinding site for residue EDO B 1410
ChainResidue
BVAL1139
BGLY1165
BTHR1167
BHOH1795
BHOH1826

site_idAE1
Number of Residues8
Detailsbinding site for residue EDO B 1411
ChainResidue
BTYR136
BARG139
BHIS160
BASN407
BHIS415
BHOH1506
AG19
AC20

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues1
DetailsACT_SITE: For RuvC-like nuclease domain => ECO:0000305|PubMed:24529477
ChainResidueDetails
BALA10

site_idSWS_FT_FI2
Number of Residues1
DetailsACT_SITE: Proton acceptor for HNH nuclease domain => ECO:0000305|PubMed:24529477
ChainResidueDetails
BALA840

site_idSWS_FT_FI3
Number of Residues6
DetailsBINDING: BINDING => ECO:0000269|PubMed:24505130
ChainResidueDetails
BALA10
BGLU762
BGLU766
BHIS983
BHIS1297
BASP1328

220113

PDB entries from 2024-05-22

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