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5AZF

Crystal structure of LGG-1 complexed with a WEEL peptide

Functional Information from GO Data
ChainGOidnamespacecontents
A0000045biological_processautophagosome assembly
A0000407cellular_componentphagophore assembly site
A0000421cellular_componentautophagosome membrane
A0000422biological_processautophagy of mitochondrion
A0001778biological_processplasma membrane repair
A0005515molecular_functionprotein binding
A0005634cellular_componentnucleus
A0005737cellular_componentcytoplasm
A0005739cellular_componentmitochondrion
A0005741cellular_componentmitochondrial outer membrane
A0005764cellular_componentlysosome
A0005776cellular_componentautophagosome
A0005886cellular_componentplasma membrane
A0006914biological_processautophagy
A0006995biological_processcellular response to nitrogen starvation
A0008340biological_processdetermination of adult lifespan
A0008429molecular_functionphosphatidylethanolamine binding
A0009408biological_processresponse to heat
A0012501biological_processprogrammed cell death
A0016236biological_processmacroautophagy
A0030425cellular_componentdendrite
A0030670cellular_componentphagocytic vesicle membrane
A0031410cellular_componentcytoplasmic vesicle
A0031625molecular_functionubiquitin protein ligase binding
A0040024biological_processdauer larval development
A0042995cellular_componentcell projection
A0043005cellular_componentneuron projection
A0043025cellular_componentneuronal cell body
A0043202cellular_componentlysosomal lumen
A0043204cellular_componentperikaryon
A0050811molecular_functionGABA receptor binding
A0050830biological_processdefense response to Gram-positive bacterium
A0070266biological_processnecroptotic process
A0097237biological_processcellular response to toxic substance
A0097352biological_processautophagosome maturation
A0098792biological_processxenophagy
A2000786biological_processpositive regulation of autophagosome assembly
B0000045biological_processautophagosome assembly
B0000407cellular_componentphagophore assembly site
B0000421cellular_componentautophagosome membrane
B0000422biological_processautophagy of mitochondrion
B0001778biological_processplasma membrane repair
B0005515molecular_functionprotein binding
B0005634cellular_componentnucleus
B0005737cellular_componentcytoplasm
B0005739cellular_componentmitochondrion
B0005741cellular_componentmitochondrial outer membrane
B0005764cellular_componentlysosome
B0005776cellular_componentautophagosome
B0005886cellular_componentplasma membrane
B0006914biological_processautophagy
B0006995biological_processcellular response to nitrogen starvation
B0008340biological_processdetermination of adult lifespan
B0008429molecular_functionphosphatidylethanolamine binding
B0009408biological_processresponse to heat
B0012501biological_processprogrammed cell death
B0016236biological_processmacroautophagy
B0030425cellular_componentdendrite
B0030670cellular_componentphagocytic vesicle membrane
B0031410cellular_componentcytoplasmic vesicle
B0031625molecular_functionubiquitin protein ligase binding
B0040024biological_processdauer larval development
B0042995cellular_componentcell projection
B0043005cellular_componentneuron projection
B0043025cellular_componentneuronal cell body
B0043202cellular_componentlysosomal lumen
B0043204cellular_componentperikaryon
B0050811molecular_functionGABA receptor binding
B0050830biological_processdefense response to Gram-positive bacterium
B0070266biological_processnecroptotic process
B0097237biological_processcellular response to toxic substance
B0097352biological_processautophagosome maturation
B0098792biological_processxenophagy
B2000786biological_processpositive regulation of autophagosome assembly
Functional Information from PDB Data
site_idAC1
Number of Residues6
Detailsbinding site for residue CD A 201
ChainResidue
AHIS42
AASP97
AHOH347
AHOH426
AHOH428
AHOH435

site_idAC2
Number of Residues6
Detailsbinding site for residue CD A 202
ChainResidue
AHOH439
AHOH451
AHOH490
AHIS98
AHOH338
AHOH432

site_idAC3
Number of Residues6
Detailsbinding site for residue CD A 203
ChainResidue
AHIS99
ACD205
AHOH374
AHOH445
AHOH461
AHOH462

site_idAC4
Number of Residues5
Detailsbinding site for residue CD A 204
ChainResidue
AHIS0
AGLY116
BGLY-2
BHOH394
BHOH396

site_idAC5
Number of Residues4
Detailsbinding site for residue CD A 205
ChainResidue
AHIS99
ACD203
AHOH374
AHOH434

site_idAC6
Number of Residues6
Detailsbinding site for residue CD B 201
ChainResidue
BHIS42
BASP97
BHOH346
BHOH429
BHOH441
BHOH445

site_idAC7
Number of Residues6
Detailsbinding site for residue CD B 202
ChainResidue
BHIS98
BHOH319
BHOH436
BHOH452
BHOH455
BHOH482

site_idAC8
Number of Residues5
Detailsbinding site for residue CD B 203
ChainResidue
BHIS99
BCD207
BHOH369
BHOH458
BHOH467

site_idAC9
Number of Residues5
Detailsbinding site for residue CD B 204
ChainResidue
AGLY-2
AHOH337
AHOH388
BHIS0
BGLY116

site_idAD1
Number of Residues5
Detailsbinding site for residue CD B 205
ChainResidue
BASP27
BHOH410
BHOH437
CTRP1
CHOH109

site_idAD2
Number of Residues1
Detailsbinding site for residue CD B 206
ChainResidue
BGLU17

site_idAD3
Number of Residues4
Detailsbinding site for residue CD B 207
ChainResidue
BHIS99
BCD203
BHOH369
BHOH412

site_idAD4
Number of Residues5
Detailsbinding site for residue SO4 B 208
ChainResidue
BLYS46
BLYS47
BLYS48
BHOH311
BHOH326

site_idAD5
Number of Residues4
Detailsbinding site for residue CD D 101
ChainResidue
DTRP1
DHOH201
DHOH205
DHOH209

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues6
DetailsSITE: Required for the interaction with unc-51 => ECO:0000269|PubMed:26687600
ChainResidueDetails
ATYR25
ALEU50
APHE104
BTYR25
BLEU50
BPHE104

site_idSWS_FT_FI2
Number of Residues2
DetailsSITE: Required for interaction with sqst-1 => ECO:0000269|PubMed:26687600
ChainResidueDetails
AARG28
BARG28

site_idSWS_FT_FI3
Number of Residues2
DetailsSITE: Cleavage => ECO:0000269|PubMed:22767594, ECO:0000305|PubMed:20550938, ECO:0000305|PubMed:21802374
ChainResidueDetails
AGLY116
BGLY116

site_idSWS_FT_FI4
Number of Residues2
DetailsLIPID: Phosphatidylethanolamine amidated glycine => ECO:0000269|PubMed:22767594, ECO:0000305|PubMed:20550938, ECO:0000305|PubMed:21802374
ChainResidueDetails
AGLY116
BGLY116

223532

PDB entries from 2024-08-07

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